Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4575 and GFF4576 are separated by 35 nucleotides GFF4576 and GFF4577 are separated by 38 nucleotides GFF4577 and GFF4578 are separated by 147 nucleotides
GFF4575 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 213,433 to 215,385
GFF4575
GFF4576 - BUG/TctC family periplasmic protein, at 215,421 to 216,422
GFF4576
GFF4577 - Electron transfer flavoprotein, beta subunit, at 216,461 to 217,210
GFF4577
GFF4578 - Electron transfer flavoprotein, alpha subunit, at 217,358 to 218,290
GFF4578
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1 at 214.475 kb on - strand, within GFF4575 at 214.475 kb on - strand, within GFF4575 at 214.645 kb on + strand, within GFF4575 at 214.645 kb on + strand, within GFF4575 at 214.645 kb on + strand, within GFF4575 at 214.645 kb on + strand, within GFF4575 at 214.832 kb on + strand, within GFF4575 at 214.833 kb on - strand, within GFF4575 at 214.833 kb on - strand, within GFF4575 at 214.982 kb on - strand, within GFF4575 at 214.982 kb on - strand, within GFF4575 at 215.146 kb on + strand, within GFF4575 at 215.146 kb on + strand, within GFF4575 at 215.412 kb on + strand at 215.412 kb on + strand at 215.412 kb on + strand at 215.412 kb on + strand at 215.520 kb on + strand at 215.703 kb on + strand, within GFF4576 at 215.800 kb on - strand, within GFF4576 at 215.877 kb on + strand, within GFF4576 at 215.908 kb on - strand, within GFF4576 at 215.994 kb on + strand, within GFF4576 at 215.994 kb on + strand, within GFF4576 at 215.995 kb on - strand, within GFF4576 at 215.995 kb on - strand, within GFF4576 at 215.995 kb on - strand, within GFF4576 at 216.051 kb on + strand, within GFF4576 at 216.361 kb on - strand at 216.361 kb on - strand at 216.361 kb on - strand at 216.361 kb on - strand at 216.420 kb on + strand at 216.421 kb on - strand at 216.421 kb on - strand at 216.421 kb on - strand at 216.421 kb on - strand at 216.498 kb on - strand at 217.243 kb on + strand at 217.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 214,475 - GFF4575 0.53 +0.2 214,475 - GFF4575 0.53 -0.6 214,645 + GFF4575 0.62 -0.9 214,645 + GFF4575 0.62 -0.5 214,645 + GFF4575 0.62 +0.1 214,645 + GFF4575 0.62 -0.1 214,832 + GFF4575 0.72 -0.8 214,833 - GFF4575 0.72 +0.0 214,833 - GFF4575 0.72 -0.9 214,982 - GFF4575 0.79 -0.4 214,982 - GFF4575 0.79 +1.5 215,146 + GFF4575 0.88 -0.3 215,146 + GFF4575 0.88 +0.8 215,412 + -1.2 215,412 + -0.4 215,412 + -0.1 215,412 + -0.4 215,520 + +1.4 215,703 + GFF4576 0.28 +0.9 215,800 - GFF4576 0.38 +0.9 215,877 + GFF4576 0.46 +0.6 215,908 - GFF4576 0.49 +1.2 215,994 + GFF4576 0.57 -0.7 215,994 + GFF4576 0.57 +0.4 215,995 - GFF4576 0.57 +0.1 215,995 - GFF4576 0.57 -0.4 215,995 - GFF4576 0.57 +0.9 216,051 + GFF4576 0.63 +1.1 216,361 - -0.3 216,361 - -2.0 216,361 - +1.4 216,361 - -0.4 216,420 + -0.9 216,421 - -0.7 216,421 - -0.1 216,421 - -0.1 216,421 - -1.6 216,498 - -1.6 217,243 + +1.1 217,373 - -0.1
Or see this region's nucleotide sequence