Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4571 and GFF4572 overlap by 4 nucleotides GFF4572 and GFF4573 are separated by 61 nucleotides GFF4573 and GFF4574 are separated by 40 nucleotides
GFF4571 - Acyl-CoA dehydrogenase family protein, at 209,108 to 210,250
GFF4571
GFF4572 - Enoyl-CoA hydratase (EC 4.2.1.17), at 210,247 to 211,074
GFF4572
GFF4573 - L-carnitine dehydratase/bile acid-inducible protein F, at 211,136 to 212,344
GFF4573
GFF4574 - BUG/TctC family periplasmic protein, at 212,385 to 213,377
GFF4574
Position (kb) 211
212
213 Strain fitness (log2 ratio) -1
0
1 at 210.155 kb on + strand at 210.155 kb on + strand at 210.218 kb on + strand at 210.218 kb on + strand at 210.218 kb on + strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.352 kb on + strand, within GFF4572 at 210.352 kb on + strand, within GFF4572 at 210.353 kb on - strand, within GFF4572 at 210.649 kb on + strand, within GFF4572 at 210.649 kb on + strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.661 kb on + strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 211.326 kb on - strand, within GFF4573 at 211.326 kb on - strand, within GFF4573 at 211.475 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.512 kb on - strand, within GFF4573 at 211.512 kb on - strand, within GFF4573 at 211.566 kb on - strand, within GFF4573 at 211.673 kb on + strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.703 kb on + strand, within GFF4573 at 211.778 kb on + strand, within GFF4573 at 211.779 kb on - strand, within GFF4573 at 211.779 kb on - strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.782 kb on - strand, within GFF4573 at 212.661 kb on + strand, within GFF4574 at 212.763 kb on + strand, within GFF4574 at 212.763 kb on + strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 213.268 kb on + strand, within GFF4574 at 213.269 kb on - strand, within GFF4574
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 210,155 + -0.7 210,155 + -0.6 210,218 + -0.9 210,218 + -0.1 210,218 + +0.0 210,219 - -0.0 210,219 - -1.1 210,219 - -1.3 210,219 - -0.5 210,352 + GFF4572 0.13 -0.6 210,352 + GFF4572 0.13 -0.5 210,353 - GFF4572 0.13 -0.2 210,649 + GFF4572 0.49 -0.1 210,649 + GFF4572 0.49 -0.5 210,650 - GFF4572 0.49 -0.6 210,650 - GFF4572 0.49 -1.0 210,650 - GFF4572 0.49 +0.1 210,650 - GFF4572 0.49 -0.4 210,661 + GFF4572 0.50 -0.9 210,662 - GFF4572 0.50 +0.2 210,662 - GFF4572 0.50 -1.1 210,662 - GFF4572 0.50 -0.2 210,662 - GFF4572 0.50 -0.4 211,326 - GFF4573 0.16 -1.4 211,326 - GFF4573 0.16 -0.3 211,475 + GFF4573 0.28 -0.4 211,511 + GFF4573 0.31 +1.2 211,511 + GFF4573 0.31 +0.1 211,511 + GFF4573 0.31 -1.6 211,511 + GFF4573 0.31 -0.2 211,511 + GFF4573 0.31 -0.1 211,511 + GFF4573 0.31 -0.1 211,512 - GFF4573 0.31 -1.2 211,512 - GFF4573 0.31 -0.6 211,566 - GFF4573 0.36 -1.6 211,673 + GFF4573 0.44 -0.0 211,674 - GFF4573 0.44 -1.1 211,674 - GFF4573 0.44 -1.3 211,674 - GFF4573 0.44 -0.2 211,674 - GFF4573 0.44 +0.2 211,674 - GFF4573 0.44 -0.1 211,703 + GFF4573 0.47 -0.4 211,778 + GFF4573 0.53 +0.3 211,779 - GFF4573 0.53 +0.3 211,779 - GFF4573 0.53 -0.8 211,781 + GFF4573 0.53 +0.1 211,781 + GFF4573 0.53 -0.2 211,781 + GFF4573 0.53 +0.9 211,782 - GFF4573 0.53 -0.0 212,661 + GFF4574 0.28 -0.3 212,763 + GFF4574 0.38 +0.4 212,763 + GFF4574 0.38 -0.0 212,764 - GFF4574 0.38 -0.9 212,764 - GFF4574 0.38 -0.5 212,764 - GFF4574 0.38 -0.1 212,764 - GFF4574 0.38 +0.4 212,869 - GFF4574 0.49 -1.1 212,869 - GFF4574 0.49 -0.2 212,869 - GFF4574 0.49 +0.4 212,869 - GFF4574 0.49 +0.0 212,869 - GFF4574 0.49 +0.7 213,268 + GFF4574 0.89 -0.6 213,269 - GFF4574 0.89 -0.3
Or see this region's nucleotide sequence