Strain Fitness in Variovorax sp. SCN45 around GFF4570

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4569 and GFF4570 are separated by 10 nucleotidesGFF4570 and GFF4571 are separated by 12 nucleotides GFF4569 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 206,686 to 207,876 GFF4569 GFF4570 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 207,887 to 209,095 GFF4570 GFF4571 - Acyl-CoA dehydrogenase family protein, at 209,108 to 210,250 GFF4571 Position (kb) 207 208 209 210Strain fitness (log2 ratio) -1 0 1at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.169 kb on + strand, within GFF4569at 207.170 kb on - strand, within GFF4569at 207.170 kb on - strand, within GFF4569at 207.250 kb on + strand, within GFF4569at 207.251 kb on - strand, within GFF4569at 207.370 kb on + strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.670 kb on + strand, within GFF4569at 207.670 kb on + strand, within GFF4569at 207.670 kb on + strand, within GFF4569at 207.671 kb on - strand, within GFF4569at 207.811 kb on + strandat 207.811 kb on + strandat 207.812 kb on - strandat 207.812 kb on - strandat 207.871 kb on + strandat 207.872 kb on - strandat 208.196 kb on + strand, within GFF4570at 208.196 kb on + strand, within GFF4570at 208.197 kb on - strand, within GFF4570at 208.269 kb on - strand, within GFF4570at 208.349 kb on + strand, within GFF4570at 208.349 kb on + strand, within GFF4570at 208.349 kb on + strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.507 kb on + strand, within GFF4570at 208.507 kb on + strand, within GFF4570at 208.508 kb on - strand, within GFF4570at 208.613 kb on + strand, within GFF4570at 208.614 kb on - strand, within GFF4570at 208.614 kb on - strand, within GFF4570at 208.614 kb on - strand, within GFF4570at 208.625 kb on + strand, within GFF4570at 208.626 kb on - strand, within GFF4570at 208.626 kb on - strand, within GFF4570at 208.626 kb on - strand, within GFF4570at 208.919 kb on + strand, within GFF4570at 208.919 kb on + strand, within GFF4570at 208.920 kb on - strand, within GFF4570at 208.920 kb on - strand, within GFF4570at 208.920 kb on - strand, within GFF4570at 208.958 kb on + strand, within GFF4570at 208.958 kb on + strand, within GFF4570at 208.959 kb on - strand, within GFF4570at 208.959 kb on - strand, within GFF4570at 208.959 kb on - strand, within GFF4570at 208.959 kb on - strand, within GFF4570at 208.959 kb on - strand, within GFF4570at 208.985 kb on + strandat 208.985 kb on + strandat 208.986 kb on - strandat 208.986 kb on - strandat 209.094 kb on - strandat 209.177 kb on + strandat 209.177 kb on + strandat 209.177 kb on + strandat 209.177 kb on + strandat 209.177 kb on + strandat 209.178 kb on - strandat 209.495 kb on + strand, within GFF4571at 209.496 kb on - strand, within GFF4571at 209.572 kb on - strand, within GFF4571at 209.885 kb on + strand, within GFF4571at 209.886 kb on - strand, within GFF4571

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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207,127 + GFF4569 0.37 -0.9
207,127 + GFF4569 0.37 +0.5
207,127 + GFF4569 0.37 +0.4
207,127 + GFF4569 0.37 -0.2
207,127 + GFF4569 0.37 +0.2
207,127 + GFF4569 0.37 +0.6
207,127 + GFF4569 0.37 +0.4
207,127 + GFF4569 0.37 -0.4
207,127 + GFF4569 0.37 -1.2
207,127 + GFF4569 0.37 -1.1
207,127 + GFF4569 0.37 +1.1
207,128 - GFF4569 0.37 -0.1
207,128 - GFF4569 0.37 -0.4
207,128 - GFF4569 0.37 +0.4
207,128 - GFF4569 0.37 +0.1
207,128 - GFF4569 0.37 -1.1
207,169 + GFF4569 0.41 +1.5
207,170 - GFF4569 0.41 -1.2
207,170 - GFF4569 0.41 -0.4
207,250 + GFF4569 0.47 +1.0
207,251 - GFF4569 0.47 -0.3
207,370 + GFF4569 0.57 +0.9
207,371 - GFF4569 0.58 +0.5
207,371 - GFF4569 0.58 -0.0
207,371 - GFF4569 0.58 -0.1
207,371 - GFF4569 0.58 -0.6
207,371 - GFF4569 0.58 -1.3
207,371 - GFF4569 0.58 -0.2
207,670 + GFF4569 0.83 -1.0
207,670 + GFF4569 0.83 +0.6
207,670 + GFF4569 0.83 -0.0
207,671 - GFF4569 0.83 -0.8
207,811 + +0.7
207,811 + -0.1
207,812 - +1.6
207,812 - -0.8
207,871 + -0.7
207,872 - +0.6
208,196 + GFF4570 0.26 -0.3
208,196 + GFF4570 0.26 +1.4
208,197 - GFF4570 0.26 -0.5
208,269 - GFF4570 0.32 -0.4
208,349 + GFF4570 0.38 +0.9
208,349 + GFF4570 0.38 +0.8
208,349 + GFF4570 0.38 +1.2
208,350 - GFF4570 0.38 -0.7
208,350 - GFF4570 0.38 +0.8
208,350 - GFF4570 0.38 +0.5
208,350 - GFF4570 0.38 +0.3
208,350 - GFF4570 0.38 -1.2
208,350 - GFF4570 0.38 +0.6
208,350 - GFF4570 0.38 -0.3
208,350 - GFF4570 0.38 -0.3
208,507 + GFF4570 0.51 -0.4
208,507 + GFF4570 0.51 +0.1
208,508 - GFF4570 0.51 -0.8
208,613 + GFF4570 0.60 -0.4
208,614 - GFF4570 0.60 -0.9
208,614 - GFF4570 0.60 -0.8
208,614 - GFF4570 0.60 -0.3
208,625 + GFF4570 0.61 -0.1
208,626 - GFF4570 0.61 +0.1
208,626 - GFF4570 0.61 -0.7
208,626 - GFF4570 0.61 -0.1
208,919 + GFF4570 0.85 +0.2
208,919 + GFF4570 0.85 -0.7
208,920 - GFF4570 0.85 -0.3
208,920 - GFF4570 0.85 -0.2
208,920 - GFF4570 0.85 +1.6
208,958 + GFF4570 0.89 -0.2
208,958 + GFF4570 0.89 -0.1
208,959 - GFF4570 0.89 +0.4
208,959 - GFF4570 0.89 -0.1
208,959 - GFF4570 0.89 +0.2
208,959 - GFF4570 0.89 +1.1
208,959 - GFF4570 0.89 +0.3
208,985 + -1.1
208,985 + -0.4
208,986 - +0.0
208,986 - -0.9
209,094 - +0.4
209,177 + -0.5
209,177 + -1.0
209,177 + +0.7
209,177 + +0.4
209,177 + +1.5
209,178 - -0.6
209,495 + GFF4571 0.34 +0.6
209,496 - GFF4571 0.34 +0.8
209,572 - GFF4571 0.41 -0.6
209,885 + GFF4571 0.68 -0.7
209,886 - GFF4571 0.68 +0.9

Or see this region's nucleotide sequence