Strain Fitness in Variovorax sp. SCN45 around GFF4548

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4547 and GFF4548 are separated by 217 nucleotidesGFF4548 and GFF4549 are separated by 71 nucleotides GFF4547 - no description, at 184,294 to 185,334 GFF4547 GFF4548 - Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12), at 185,552 to 186,070 GFF4548 GFF4549 - Cysteine synthase (EC 2.5.1.47), at 186,142 to 187,062 GFF4549 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2 3at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.592 kb on + strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.593 kb on - strand, within GFF4547at 184.704 kb on + strand, within GFF4547at 184.704 kb on + strand, within GFF4547at 184.705 kb on - strand, within GFF4547at 184.772 kb on + strand, within GFF4547at 184.772 kb on + strand, within GFF4547at 184.772 kb on + strand, within GFF4547at 184.772 kb on + strand, within GFF4547at 184.772 kb on + strand, within GFF4547at 184.772 kb on + strand, within GFF4547at 184.772 kb on + strand, within GFF4547at 184.772 kb on + strand, within GFF4547at 184.773 kb on - strand, within GFF4547at 184.773 kb on - strand, within GFF4547at 184.773 kb on - strand, within GFF4547at 184.773 kb on - strand, within GFF4547at 184.773 kb on - strand, within GFF4547at 184.773 kb on - strand, within GFF4547at 184.773 kb on - strand, within GFF4547at 184.866 kb on - strand, within GFF4547at 184.866 kb on - strand, within GFF4547at 184.866 kb on - strand, within GFF4547at 184.931 kb on + strand, within GFF4547at 184.931 kb on + strand, within GFF4547at 184.931 kb on + strand, within GFF4547at 184.931 kb on + strand, within GFF4547at 184.931 kb on + strand, within GFF4547at 184.931 kb on + strand, within GFF4547at 184.932 kb on - strand, within GFF4547at 184.932 kb on - strand, within GFF4547at 184.932 kb on - strand, within GFF4547at 184.932 kb on - strand, within GFF4547at 184.932 kb on - strand, within GFF4547at 184.958 kb on + strand, within GFF4547at 184.958 kb on + strand, within GFF4547at 184.959 kb on - strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.042 kb on + strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.043 kb on - strand, within GFF4547at 185.046 kb on + strand, within GFF4547at 185.046 kb on + strand, within GFF4547at 185.046 kb on + strand, within GFF4547at 185.046 kb on + strand, within GFF4547at 185.046 kb on + strand, within GFF4547at 185.046 kb on + strand, within GFF4547at 185.046 kb on + strand, within GFF4547at 185.046 kb on + strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.047 kb on - strand, within GFF4547at 185.335 kb on - strandat 185.335 kb on - strandat 185.357 kb on + strandat 185.357 kb on + strandat 185.357 kb on + strandat 185.357 kb on + strandat 185.358 kb on - strandat 185.358 kb on - strandat 185.358 kb on - strandat 185.358 kb on - strandat 185.385 kb on + strandat 185.385 kb on + strandat 185.386 kb on - strandat 185.386 kb on - strandat 185.386 kb on - strandat 185.399 kb on + strandat 185.400 kb on - strandat 185.485 kb on + strandat 185.485 kb on + strandat 185.485 kb on + strandat 185.486 kb on - strandat 185.486 kb on - strandat 185.495 kb on + strandat 185.496 kb on - strandat 185.496 kb on - strandat 185.509 kb on + strandat 185.510 kb on - strandat 185.510 kb on - strandat 185.510 kb on - strandat 185.762 kb on + strand, within GFF4548at 185.762 kb on + strand, within GFF4548at 185.763 kb on - strand, within GFF4548at 185.763 kb on - strand, within GFF4548at 185.763 kb on - strand, within GFF4548at 186.017 kb on + strand, within GFF4548at 186.017 kb on + strand, within GFF4548at 186.018 kb on - strand, within GFF4548at 186.018 kb on - strand, within GFF4548at 186.400 kb on + strand, within GFF4549at 186.400 kb on + strand, within GFF4549at 186.401 kb on - strand, within GFF4549at 186.401 kb on - strand, within GFF4549at 186.401 kb on - strand, within GFF4549at 186.401 kb on - strand, within GFF4549at 186.401 kb on - strand, within GFF4549at 186.401 kb on - strand, within GFF4549at 186.463 kb on + strand, within GFF4549at 187.012 kb on + strandat 187.012 kb on + strandat 187.012 kb on + strandat 187.013 kb on - strandat 187.013 kb on - strandat 187.030 kb on + strandat 187.030 kb on + strandat 187.030 kb on + strandat 187.030 kb on + strandat 187.030 kb on + strandat 187.031 kb on - strandat 187.031 kb on - strandat 187.031 kb on - strandat 187.031 kb on - strandat 187.031 kb on - strandat 187.031 kb on - strandat 187.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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184,592 + GFF4547 0.29 -0.3
184,592 + GFF4547 0.29 -0.4
184,592 + GFF4547 0.29 -0.5
184,592 + GFF4547 0.29 +0.2
184,592 + GFF4547 0.29 +0.4
184,592 + GFF4547 0.29 +0.9
184,592 + GFF4547 0.29 +0.9
184,592 + GFF4547 0.29 -0.9
184,592 + GFF4547 0.29 +0.7
184,592 + GFF4547 0.29 -0.4
184,593 - GFF4547 0.29 -1.4
184,593 - GFF4547 0.29 +0.4
184,593 - GFF4547 0.29 +0.1
184,593 - GFF4547 0.29 -0.4
184,593 - GFF4547 0.29 -0.4
184,593 - GFF4547 0.29 +0.4
184,593 - GFF4547 0.29 -0.2
184,593 - GFF4547 0.29 +1.6
184,593 - GFF4547 0.29 +0.9
184,704 + GFF4547 0.39 -0.6
184,704 + GFF4547 0.39 -1.8
184,705 - GFF4547 0.39 +0.2
184,772 + GFF4547 0.46 +0.4
184,772 + GFF4547 0.46 +0.2
184,772 + GFF4547 0.46 -0.3
184,772 + GFF4547 0.46 +1.2
184,772 + GFF4547 0.46 -0.6
184,772 + GFF4547 0.46 -0.8
184,772 + GFF4547 0.46 -0.0
184,772 + GFF4547 0.46 +0.1
184,773 - GFF4547 0.46 -0.4
184,773 - GFF4547 0.46 -1.2
184,773 - GFF4547 0.46 +0.2
184,773 - GFF4547 0.46 -0.7
184,773 - GFF4547 0.46 +1.9
184,773 - GFF4547 0.46 -1.1
184,773 - GFF4547 0.46 -0.3
184,866 - GFF4547 0.55 -0.1
184,866 - GFF4547 0.55 +0.0
184,866 - GFF4547 0.55 +1.2
184,931 + GFF4547 0.61 -0.4
184,931 + GFF4547 0.61 -0.6
184,931 + GFF4547 0.61 +0.4
184,931 + GFF4547 0.61 -0.6
184,931 + GFF4547 0.61 +0.9
184,931 + GFF4547 0.61 -0.4
184,932 - GFF4547 0.61 -0.1
184,932 - GFF4547 0.61 -0.1
184,932 - GFF4547 0.61 +0.0
184,932 - GFF4547 0.61 -0.4
184,932 - GFF4547 0.61 -1.4
184,958 + GFF4547 0.64 -0.4
184,958 + GFF4547 0.64 -0.5
184,959 - GFF4547 0.64 +0.7
185,042 + GFF4547 0.72 -0.5
185,042 + GFF4547 0.72 -0.2
185,042 + GFF4547 0.72 -0.1
185,042 + GFF4547 0.72 -0.1
185,042 + GFF4547 0.72 +1.4
185,042 + GFF4547 0.72 -0.2
185,042 + GFF4547 0.72 +0.4
185,042 + GFF4547 0.72 -0.2
185,042 + GFF4547 0.72 -0.2
185,042 + GFF4547 0.72 -1.1
185,042 + GFF4547 0.72 +1.9
185,042 + GFF4547 0.72 -0.2
185,042 + GFF4547 0.72 +0.1
185,042 + GFF4547 0.72 +0.3
185,042 + GFF4547 0.72 +0.2
185,042 + GFF4547 0.72 -0.3
185,043 - GFF4547 0.72 +0.1
185,043 - GFF4547 0.72 -0.2
185,043 - GFF4547 0.72 -0.9
185,043 - GFF4547 0.72 +1.2
185,043 - GFF4547 0.72 -0.2
185,043 - GFF4547 0.72 -1.1
185,043 - GFF4547 0.72 -0.4
185,043 - GFF4547 0.72 -0.4
185,043 - GFF4547 0.72 +1.2
185,043 - GFF4547 0.72 -0.1
185,043 - GFF4547 0.72 -1.4
185,043 - GFF4547 0.72 -2.4
185,043 - GFF4547 0.72 -0.3
185,043 - GFF4547 0.72 -0.3
185,043 - GFF4547 0.72 -0.1
185,046 + GFF4547 0.72 -0.6
185,046 + GFF4547 0.72 +0.8
185,046 + GFF4547 0.72 -1.0
185,046 + GFF4547 0.72 -1.0
185,046 + GFF4547 0.72 -0.1
185,046 + GFF4547 0.72 +0.1
185,046 + GFF4547 0.72 +0.8
185,046 + GFF4547 0.72 +0.7
185,047 - GFF4547 0.72 -0.4
185,047 - GFF4547 0.72 -0.6
185,047 - GFF4547 0.72 -0.1
185,047 - GFF4547 0.72 -0.3
185,047 - GFF4547 0.72 -1.3
185,047 - GFF4547 0.72 +1.5
185,047 - GFF4547 0.72 -0.7
185,047 - GFF4547 0.72 -0.5
185,047 - GFF4547 0.72 -1.8
185,047 - GFF4547 0.72 +0.0
185,335 - +1.7
185,335 - +0.1
185,357 + -0.1
185,357 + -0.6
185,357 + -0.4
185,357 + -0.6
185,358 - +0.5
185,358 - +0.5
185,358 - -1.2
185,358 - -1.3
185,385 + -0.9
185,385 + -1.8
185,386 - -0.7
185,386 - -0.6
185,386 - -0.5
185,399 + -0.7
185,400 - -0.3
185,485 + -0.6
185,485 + +0.0
185,485 + +0.1
185,486 - -0.5
185,486 - -0.8
185,495 + -1.4
185,496 - -0.5
185,496 - -0.1
185,509 + +0.5
185,510 - -0.6
185,510 - -0.8
185,510 - +0.5
185,762 + GFF4548 0.40 +1.2
185,762 + GFF4548 0.40 +2.8
185,763 - GFF4548 0.41 +2.3
185,763 - GFF4548 0.41 +0.1
185,763 - GFF4548 0.41 +0.1
186,017 + GFF4548 0.90 +1.9
186,017 + GFF4548 0.90 -0.2
186,018 - GFF4548 0.90 +1.4
186,018 - GFF4548 0.90 -0.1
186,400 + GFF4549 0.28 +0.2
186,400 + GFF4549 0.28 +0.1
186,401 - GFF4549 0.28 -0.4
186,401 - GFF4549 0.28 -0.4
186,401 - GFF4549 0.28 +0.5
186,401 - GFF4549 0.28 +0.4
186,401 - GFF4549 0.28 +0.7
186,401 - GFF4549 0.28 -1.8
186,463 + GFF4549 0.35 -0.1
187,012 + -0.2
187,012 + -0.6
187,012 + -0.6
187,013 - +1.5
187,013 - -0.2
187,030 + +0.2
187,030 + +0.4
187,030 + -0.6
187,030 + -0.5
187,030 + +0.4
187,031 - +0.1
187,031 - -0.4
187,031 - -1.8
187,031 - +1.1
187,031 - +0.1
187,031 - -0.3
187,031 - +0.0

Or see this region's nucleotide sequence