Strain Fitness in Variovorax sp. SCN45 around GFF4507

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4505 and GFF4506 are separated by 481 nucleotidesGFF4506 and GFF4507 are separated by 7 nucleotidesGFF4507 and GFF4508 are separated by 15 nucleotidesGFF4508 and GFF4509 are separated by 92 nucleotidesGFF4509 and GFF4510 are separated by 39 nucleotides GFF4505 - hypothetical protein, at 148,218 to 149,147 GFF4505 GFF4506 - hypothetical protein, at 149,629 to 150,090 GFF4506 GFF4507 - no description, at 150,098 to 150,547 GFF4507 GFF4508 - no description, at 150,563 to 151,051 GFF4508 GFF4509 - no description, at 151,144 to 151,398 GFF4509 GFF4510 - hypothetical protein, at 151,438 to 152,877 GFF4510 Position (kb) 150 151Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 149.127 kb on + strandat 149.128 kb on - strandat 149.128 kb on - strandat 149.238 kb on + strandat 149.238 kb on + strandat 149.238 kb on + strandat 149.239 kb on - strandat 149.246 kb on + strandat 149.246 kb on + strandat 149.247 kb on - strandat 149.247 kb on - strandat 149.268 kb on + strandat 149.348 kb on + strandat 149.348 kb on + strandat 149.348 kb on + strandat 149.348 kb on + strandat 149.348 kb on + strandat 149.348 kb on + strandat 149.348 kb on + strandat 149.349 kb on - strandat 149.349 kb on - strandat 149.349 kb on - strandat 149.349 kb on - strandat 149.349 kb on - strandat 149.416 kb on + strandat 149.416 kb on + strandat 149.417 kb on - strandat 149.417 kb on - strandat 149.417 kb on - strandat 149.417 kb on - strandat 149.417 kb on - strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.484 kb on - strandat 149.606 kb on + strandat 149.645 kb on + strandat 149.646 kb on - strandat 149.646 kb on - strandat 149.818 kb on + strand, within GFF4506at 149.818 kb on + strand, within GFF4506at 149.818 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.978 kb on + strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 149.979 kb on - strand, within GFF4506at 150.071 kb on + strandat 150.071 kb on + strandat 150.072 kb on - strandat 150.089 kb on - strandat 150.123 kb on + strandat 150.124 kb on - strandat 150.164 kb on + strand, within GFF4507at 150.164 kb on + strand, within GFF4507at 150.164 kb on + strand, within GFF4507at 150.164 kb on + strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.167 kb on - strand, within GFF4507at 150.167 kb on - strand, within GFF4507at 150.258 kb on - strand, within GFF4507at 150.258 kb on - strand, within GFF4507at 150.258 kb on - strand, within GFF4507at 150.261 kb on + strand, within GFF4507at 150.261 kb on + strand, within GFF4507at 150.261 kb on + strand, within GFF4507at 150.262 kb on - strand, within GFF4507at 150.262 kb on - strand, within GFF4507at 150.262 kb on - strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.276 kb on - strand, within GFF4507at 150.276 kb on - strand, within GFF4507at 150.560 kb on + strandat 150.560 kb on + strandat 150.560 kb on + strandat 150.560 kb on + strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.584 kb on + strandat 150.584 kb on + strandat 150.584 kb on + strandat 150.585 kb on - strandat 150.642 kb on + strand, within GFF4508at 150.643 kb on - strand, within GFF4508at 150.674 kb on + strand, within GFF4508at 150.674 kb on + strand, within GFF4508at 150.675 kb on - strand, within GFF4508at 150.769 kb on - strand, within GFF4508at 150.881 kb on + strand, within GFF4508at 150.882 kb on - strand, within GFF4508at 150.882 kb on - strand, within GFF4508at 150.899 kb on + strand, within GFF4508at 150.899 kb on + strand, within GFF4508at 150.900 kb on - strand, within GFF4508at 150.900 kb on - strand, within GFF4508at 150.900 kb on - strand, within GFF4508at 150.923 kb on + strand, within GFF4508at 150.924 kb on - strand, within GFF4508at 151.171 kb on + strand, within GFF4509at 151.171 kb on + strand, within GFF4509at 151.171 kb on + strand, within GFF4509at 151.172 kb on - strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.307 kb on - strand, within GFF4509at 151.388 kb on - strandat 151.458 kb on + strandat 151.458 kb on + strandat 151.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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149,127 + -0.3
149,128 - -0.1
149,128 - -0.1
149,238 + -0.9
149,238 + -0.3
149,238 + +0.4
149,239 - +4.3
149,246 + -1.3
149,246 + -0.6
149,247 - -0.4
149,247 - -0.2
149,268 + +0.9
149,348 + -0.2
149,348 + -0.5
149,348 + +0.9
149,348 + -0.5
149,348 + -1.4
149,348 + +0.4
149,348 + -0.6
149,349 - +0.1
149,349 - -0.2
149,349 - +0.3
149,349 - +0.4
149,349 - +0.8
149,416 + -0.6
149,416 + -1.0
149,417 - -0.4
149,417 - +0.2
149,417 - +0.1
149,417 - +1.9
149,417 - -1.4
149,483 + +0.5
149,483 + +1.6
149,483 + -0.5
149,483 + -0.4
149,483 + +0.6
149,484 - +0.3
149,606 + -0.6
149,645 + -1.4
149,646 - +2.2
149,646 - +0.8
149,818 + GFF4506 0.41 -0.3
149,818 + GFF4506 0.41 +0.0
149,818 + GFF4506 0.41 -0.7
149,978 + GFF4506 0.76 -0.1
149,978 + GFF4506 0.76 +0.4
149,978 + GFF4506 0.76 -0.1
149,978 + GFF4506 0.76 +0.1
149,978 + GFF4506 0.76 -0.1
149,978 + GFF4506 0.76 -1.3
149,978 + GFF4506 0.76 -0.0
149,978 + GFF4506 0.76 +0.2
149,978 + GFF4506 0.76 -0.4
149,978 + GFF4506 0.76 +1.1
149,978 + GFF4506 0.76 +0.9
149,978 + GFF4506 0.76 +1.9
149,978 + GFF4506 0.76 +0.5
149,978 + GFF4506 0.76 +0.3
149,979 - GFF4506 0.76 -0.4
149,979 - GFF4506 0.76 -0.2
149,979 - GFF4506 0.76 -0.0
149,979 - GFF4506 0.76 -1.1
149,979 - GFF4506 0.76 +0.9
149,979 - GFF4506 0.76 +0.3
149,979 - GFF4506 0.76 +0.4
149,979 - GFF4506 0.76 -1.1
149,979 - GFF4506 0.76 +0.6
150,071 + +1.4
150,071 + -0.3
150,072 - -0.1
150,089 - -1.8
150,123 + -0.9
150,124 - +0.3
150,164 + GFF4507 0.15 -0.5
150,164 + GFF4507 0.15 -0.7
150,164 + GFF4507 0.15 -0.1
150,164 + GFF4507 0.15 +0.4
150,165 - GFF4507 0.15 -0.3
150,165 - GFF4507 0.15 -0.2
150,165 - GFF4507 0.15 -0.4
150,165 - GFF4507 0.15 +2.2
150,165 - GFF4507 0.15 +0.9
150,165 - GFF4507 0.15 -0.4
150,167 - GFF4507 0.15 +0.4
150,167 - GFF4507 0.15 +0.1
150,258 - GFF4507 0.36 +1.5
150,258 - GFF4507 0.36 -0.1
150,258 - GFF4507 0.36 -0.0
150,261 + GFF4507 0.36 +1.9
150,261 + GFF4507 0.36 +0.4
150,261 + GFF4507 0.36 +4.3
150,262 - GFF4507 0.36 -0.9
150,262 - GFF4507 0.36 +1.1
150,262 - GFF4507 0.36 -0.5
150,275 + GFF4507 0.39 -0.4
150,275 + GFF4507 0.39 -1.1
150,275 + GFF4507 0.39 -0.1
150,275 + GFF4507 0.39 +0.1
150,275 + GFF4507 0.39 +0.5
150,276 - GFF4507 0.40 -1.4
150,276 - GFF4507 0.40 -1.9
150,560 + -0.2
150,560 + -1.0
150,560 + -0.4
150,560 + +0.2
150,561 - +0.2
150,561 - +0.5
150,561 - -0.5
150,561 - -0.6
150,561 - +0.8
150,561 - +1.1
150,584 + -0.5
150,584 + -0.2
150,584 + +1.4
150,585 - -1.1
150,642 + GFF4508 0.16 +1.9
150,643 - GFF4508 0.16 +0.5
150,674 + GFF4508 0.23 -0.6
150,674 + GFF4508 0.23 -0.4
150,675 - GFF4508 0.23 -0.5
150,769 - GFF4508 0.42 -0.9
150,881 + GFF4508 0.65 +1.4
150,882 - GFF4508 0.65 +0.4
150,882 - GFF4508 0.65 -0.6
150,899 + GFF4508 0.69 +0.2
150,899 + GFF4508 0.69 +0.4
150,900 - GFF4508 0.69 -0.3
150,900 - GFF4508 0.69 +0.0
150,900 - GFF4508 0.69 +1.2
150,923 + GFF4508 0.74 +0.1
150,924 - GFF4508 0.74 -1.6
151,171 + GFF4509 0.11 +0.0
151,171 + GFF4509 0.11 +0.9
151,171 + GFF4509 0.11 +0.8
151,172 - GFF4509 0.11 +0.9
151,258 + GFF4509 0.45 -0.3
151,258 + GFF4509 0.45 -0.5
151,258 + GFF4509 0.45 +0.7
151,258 + GFF4509 0.45 +0.2
151,258 + GFF4509 0.45 +0.3
151,259 - GFF4509 0.45 -0.8
151,259 - GFF4509 0.45 +0.3
151,259 - GFF4509 0.45 -0.3
151,259 - GFF4509 0.45 +1.7
151,259 - GFF4509 0.45 +0.4
151,259 - GFF4509 0.45 -0.6
151,307 - GFF4509 0.64 -0.6
151,388 - +0.4
151,458 + -1.7
151,458 + -0.4
151,518 - -0.2

Or see this region's nucleotide sequence