Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4505 and GFF4506 are separated by 481 nucleotides GFF4506 and GFF4507 are separated by 7 nucleotides GFF4507 and GFF4508 are separated by 15 nucleotides
GFF4505 - hypothetical protein, at 148,218 to 149,147
GFF4505
GFF4506 - hypothetical protein, at 149,629 to 150,090
GFF4506
GFF4507 - no description, at 150,098 to 150,547
GFF4507
GFF4508 - no description, at 150,563 to 151,051
GFF4508
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 148.635 kb on + strand, within GFF4505 at 148.635 kb on + strand, within GFF4505 at 148.636 kb on - strand, within GFF4505 at 148.636 kb on - strand, within GFF4505 at 148.636 kb on - strand, within GFF4505 at 148.636 kb on - strand, within GFF4505 at 148.728 kb on - strand, within GFF4505 at 148.728 kb on - strand, within GFF4505 at 148.737 kb on + strand, within GFF4505 at 148.737 kb on + strand, within GFF4505 at 148.738 kb on - strand, within GFF4505 at 148.927 kb on - strand, within GFF4505 at 149.053 kb on + strand, within GFF4505 at 149.053 kb on + strand, within GFF4505 at 149.054 kb on - strand, within GFF4505 at 149.127 kb on + strand at 149.128 kb on - strand at 149.128 kb on - strand at 149.238 kb on + strand at 149.238 kb on + strand at 149.238 kb on + strand at 149.239 kb on - strand at 149.246 kb on + strand at 149.246 kb on + strand at 149.247 kb on - strand at 149.247 kb on - strand at 149.268 kb on + strand at 149.348 kb on + strand at 149.348 kb on + strand at 149.348 kb on + strand at 149.348 kb on + strand at 149.348 kb on + strand at 149.348 kb on + strand at 149.348 kb on + strand at 149.349 kb on - strand at 149.349 kb on - strand at 149.349 kb on - strand at 149.349 kb on - strand at 149.349 kb on - strand at 149.416 kb on + strand at 149.416 kb on + strand at 149.417 kb on - strand at 149.417 kb on - strand at 149.417 kb on - strand at 149.417 kb on - strand at 149.417 kb on - strand at 149.483 kb on + strand at 149.483 kb on + strand at 149.483 kb on + strand at 149.483 kb on + strand at 149.483 kb on + strand at 149.484 kb on - strand at 149.606 kb on + strand at 149.645 kb on + strand at 149.646 kb on - strand at 149.646 kb on - strand at 149.818 kb on + strand, within GFF4506 at 149.818 kb on + strand, within GFF4506 at 149.818 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.978 kb on + strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 149.979 kb on - strand, within GFF4506 at 150.071 kb on + strand at 150.071 kb on + strand at 150.072 kb on - strand at 150.089 kb on - strand at 150.123 kb on + strand at 150.124 kb on - strand at 150.164 kb on + strand, within GFF4507 at 150.164 kb on + strand, within GFF4507 at 150.164 kb on + strand, within GFF4507 at 150.164 kb on + strand, within GFF4507 at 150.165 kb on - strand, within GFF4507 at 150.165 kb on - strand, within GFF4507 at 150.165 kb on - strand, within GFF4507 at 150.165 kb on - strand, within GFF4507 at 150.165 kb on - strand, within GFF4507 at 150.165 kb on - strand, within GFF4507 at 150.167 kb on - strand, within GFF4507 at 150.167 kb on - strand, within GFF4507 at 150.258 kb on - strand, within GFF4507 at 150.258 kb on - strand, within GFF4507 at 150.258 kb on - strand, within GFF4507 at 150.261 kb on + strand, within GFF4507 at 150.261 kb on + strand, within GFF4507 at 150.261 kb on + strand, within GFF4507 at 150.262 kb on - strand, within GFF4507 at 150.262 kb on - strand, within GFF4507 at 150.262 kb on - strand, within GFF4507 at 150.275 kb on + strand, within GFF4507 at 150.275 kb on + strand, within GFF4507 at 150.275 kb on + strand, within GFF4507 at 150.275 kb on + strand, within GFF4507 at 150.275 kb on + strand, within GFF4507 at 150.276 kb on - strand, within GFF4507 at 150.276 kb on - strand, within GFF4507 at 150.560 kb on + strand at 150.560 kb on + strand at 150.560 kb on + strand at 150.560 kb on + strand at 150.561 kb on - strand at 150.561 kb on - strand at 150.561 kb on - strand at 150.561 kb on - strand at 150.561 kb on - strand at 150.561 kb on - strand at 150.584 kb on + strand at 150.584 kb on + strand at 150.584 kb on + strand at 150.585 kb on - strand at 150.642 kb on + strand, within GFF4508 at 150.643 kb on - strand, within GFF4508 at 150.674 kb on + strand, within GFF4508 at 150.674 kb on + strand, within GFF4508 at 150.675 kb on - strand, within GFF4508 at 150.769 kb on - strand, within GFF4508 at 150.881 kb on + strand, within GFF4508 at 150.882 kb on - strand, within GFF4508 at 150.882 kb on - strand, within GFF4508 at 150.899 kb on + strand, within GFF4508 at 150.899 kb on + strand, within GFF4508 at 150.900 kb on - strand, within GFF4508 at 150.900 kb on - strand, within GFF4508 at 150.900 kb on - strand, within GFF4508 at 150.923 kb on + strand, within GFF4508 at 150.924 kb on - strand, within GFF4508
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,635 + GFF4505 0.45 -0.2 148,635 + GFF4505 0.45 +0.4 148,636 - GFF4505 0.45 +0.9 148,636 - GFF4505 0.45 -0.6 148,636 - GFF4505 0.45 -1.1 148,636 - GFF4505 0.45 -0.4 148,728 - GFF4505 0.55 -0.4 148,728 - GFF4505 0.55 -0.2 148,737 + GFF4505 0.56 +1.2 148,737 + GFF4505 0.56 +0.3 148,738 - GFF4505 0.56 +1.1 148,927 - GFF4505 0.76 -0.1 149,053 + GFF4505 0.90 -1.1 149,053 + GFF4505 0.90 -0.5 149,054 - GFF4505 0.90 +0.5 149,127 + -0.3 149,128 - -0.1 149,128 - -0.1 149,238 + -0.9 149,238 + -0.3 149,238 + +0.4 149,239 - +4.3 149,246 + -1.3 149,246 + -0.6 149,247 - -0.4 149,247 - -0.2 149,268 + +0.9 149,348 + -0.2 149,348 + -0.5 149,348 + +0.9 149,348 + -0.5 149,348 + -1.4 149,348 + +0.4 149,348 + -0.6 149,349 - +0.1 149,349 - -0.2 149,349 - +0.3 149,349 - +0.4 149,349 - +0.8 149,416 + -0.6 149,416 + -1.0 149,417 - -0.4 149,417 - +0.2 149,417 - +0.1 149,417 - +1.9 149,417 - -1.4 149,483 + +0.5 149,483 + +1.6 149,483 + -0.5 149,483 + -0.4 149,483 + +0.6 149,484 - +0.3 149,606 + -0.6 149,645 + -1.4 149,646 - +2.2 149,646 - +0.8 149,818 + GFF4506 0.41 -0.3 149,818 + GFF4506 0.41 +0.0 149,818 + GFF4506 0.41 -0.7 149,978 + GFF4506 0.76 -0.1 149,978 + GFF4506 0.76 +0.4 149,978 + GFF4506 0.76 -0.1 149,978 + GFF4506 0.76 +0.1 149,978 + GFF4506 0.76 -0.1 149,978 + GFF4506 0.76 -1.3 149,978 + GFF4506 0.76 -0.0 149,978 + GFF4506 0.76 +0.2 149,978 + GFF4506 0.76 -0.4 149,978 + GFF4506 0.76 +1.1 149,978 + GFF4506 0.76 +0.9 149,978 + GFF4506 0.76 +1.9 149,978 + GFF4506 0.76 +0.5 149,978 + GFF4506 0.76 +0.3 149,979 - GFF4506 0.76 -0.4 149,979 - GFF4506 0.76 -0.2 149,979 - GFF4506 0.76 -0.0 149,979 - GFF4506 0.76 -1.1 149,979 - GFF4506 0.76 +0.9 149,979 - GFF4506 0.76 +0.3 149,979 - GFF4506 0.76 +0.4 149,979 - GFF4506 0.76 -1.1 149,979 - GFF4506 0.76 +0.6 150,071 + +1.4 150,071 + -0.3 150,072 - -0.1 150,089 - -1.8 150,123 + -0.9 150,124 - +0.3 150,164 + GFF4507 0.15 -0.5 150,164 + GFF4507 0.15 -0.7 150,164 + GFF4507 0.15 -0.1 150,164 + GFF4507 0.15 +0.4 150,165 - GFF4507 0.15 -0.3 150,165 - GFF4507 0.15 -0.2 150,165 - GFF4507 0.15 -0.4 150,165 - GFF4507 0.15 +2.2 150,165 - GFF4507 0.15 +0.9 150,165 - GFF4507 0.15 -0.4 150,167 - GFF4507 0.15 +0.4 150,167 - GFF4507 0.15 +0.1 150,258 - GFF4507 0.36 +1.5 150,258 - GFF4507 0.36 -0.1 150,258 - GFF4507 0.36 -0.0 150,261 + GFF4507 0.36 +1.9 150,261 + GFF4507 0.36 +0.4 150,261 + GFF4507 0.36 +4.3 150,262 - GFF4507 0.36 -0.9 150,262 - GFF4507 0.36 +1.1 150,262 - GFF4507 0.36 -0.5 150,275 + GFF4507 0.39 -0.4 150,275 + GFF4507 0.39 -1.1 150,275 + GFF4507 0.39 -0.1 150,275 + GFF4507 0.39 +0.1 150,275 + GFF4507 0.39 +0.5 150,276 - GFF4507 0.40 -1.4 150,276 - GFF4507 0.40 -1.9 150,560 + -0.2 150,560 + -1.0 150,560 + -0.4 150,560 + +0.2 150,561 - +0.2 150,561 - +0.5 150,561 - -0.5 150,561 - -0.6 150,561 - +0.8 150,561 - +1.1 150,584 + -0.5 150,584 + -0.2 150,584 + +1.4 150,585 - -1.1 150,642 + GFF4508 0.16 +1.9 150,643 - GFF4508 0.16 +0.5 150,674 + GFF4508 0.23 -0.6 150,674 + GFF4508 0.23 -0.4 150,675 - GFF4508 0.23 -0.5 150,769 - GFF4508 0.42 -0.9 150,881 + GFF4508 0.65 +1.4 150,882 - GFF4508 0.65 +0.4 150,882 - GFF4508 0.65 -0.6 150,899 + GFF4508 0.69 +0.2 150,899 + GFF4508 0.69 +0.4 150,900 - GFF4508 0.69 -0.3 150,900 - GFF4508 0.69 +0.0 150,900 - GFF4508 0.69 +1.2 150,923 + GFF4508 0.74 +0.1 150,924 - GFF4508 0.74 -1.6
Or see this region's nucleotide sequence