Strain Fitness in Variovorax sp. SCN45 around GFF4484

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4483 and GFF4484 are separated by 2 nucleotidesGFF4484 and GFF4485 are separated by 49 nucleotides GFF4483 - ATP-dependent hsl protease ATP-binding subunit HslU, at 126,435 to 127,763 GFF4483 GFF4484 - ATP-dependent protease subunit HslV (EC 3.4.25.2), at 127,766 to 128,320 GFF4484 GFF4485 - FIG00715336: hypothetical protein, at 128,370 to 130,034 GFF4485 Position (kb) 127 128 129Strain fitness (log2 ratio) -1 0 1 2 3 4at 126.886 kb on + strand, within GFF4483at 126.886 kb on + strand, within GFF4483at 126.886 kb on + strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 127.495 kb on + strand, within GFF4483at 127.495 kb on + strand, within GFF4483at 127.495 kb on + strand, within GFF4483at 127.496 kb on - strand, within GFF4483at 127.496 kb on - strand, within GFF4483at 127.496 kb on - strand, within GFF4483at 127.496 kb on - strand, within GFF4483at 127.496 kb on - strand, within GFF4483at 127.496 kb on - strand, within GFF4483at 127.496 kb on - strand, within GFF4483at 127.800 kb on + strandat 127.800 kb on + strandat 127.800 kb on + strandat 127.899 kb on + strand, within GFF4484at 127.899 kb on + strand, within GFF4484at 127.900 kb on - strand, within GFF4484at 127.900 kb on - strand, within GFF4484at 127.900 kb on - strand, within GFF4484at 128.169 kb on + strand, within GFF4484at 128.169 kb on + strand, within GFF4484at 128.170 kb on - strand, within GFF4484at 128.170 kb on - strand, within GFF4484at 128.170 kb on - strand, within GFF4484at 128.209 kb on + strand, within GFF4484at 128.209 kb on + strand, within GFF4484at 128.209 kb on + strand, within GFF4484at 128.209 kb on + strand, within GFF4484at 128.209 kb on + strand, within GFF4484at 128.210 kb on - strand, within GFF4484at 128.210 kb on - strand, within GFF4484at 128.210 kb on - strand, within GFF4484at 128.210 kb on - strand, within GFF4484at 128.210 kb on - strand, within GFF4484at 128.371 kb on + strandat 128.371 kb on + strandat 128.371 kb on + strandat 128.371 kb on + strandat 128.372 kb on - strandat 128.372 kb on - strandat 128.408 kb on + strandat 128.408 kb on + strandat 128.408 kb on + strandat 128.408 kb on + strandat 128.409 kb on - strandat 128.409 kb on - strandat 128.412 kb on + strandat 128.412 kb on + strandat 128.412 kb on + strandat 128.412 kb on + strandat 128.412 kb on + strandat 128.412 kb on + strandat 128.413 kb on - strandat 128.413 kb on - strandat 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.785 kb on + strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.786 kb on - strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.797 kb on + strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 128.798 kb on - strand, within GFF4485at 129.247 kb on + strand, within GFF4485at 129.247 kb on + strand, within GFF4485at 129.247 kb on + strand, within GFF4485at 129.247 kb on + strand, within GFF4485at 129.247 kb on + strand, within GFF4485at 129.248 kb on - strand, within GFF4485at 129.248 kb on - strand, within GFF4485at 129.248 kb on - strand, within GFF4485at 129.248 kb on - strand, within GFF4485at 129.248 kb on - strand, within GFF4485at 129.248 kb on - strand, within GFF4485at 129.295 kb on + strand, within GFF4485at 129.295 kb on + strand, within GFF4485at 129.295 kb on + strand, within GFF4485at 129.295 kb on + strand, within GFF4485at 129.296 kb on - strand, within GFF4485at 129.296 kb on - strand, within GFF4485at 129.296 kb on - strand, within GFF4485at 129.296 kb on - strand, within GFF4485at 129.296 kb on - strand, within GFF4485

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
126,886 + GFF4483 0.34 -0.1
126,886 + GFF4483 0.34 +0.4
126,886 + GFF4483 0.34 +1.4
126,887 - GFF4483 0.34 -0.1
126,887 - GFF4483 0.34 -0.8
126,887 - GFF4483 0.34 -0.9
126,887 - GFF4483 0.34 -0.7
126,887 - GFF4483 0.34 -0.3
126,887 - GFF4483 0.34 -0.2
127,495 + GFF4483 0.80 -0.2
127,495 + GFF4483 0.80 -0.2
127,495 + GFF4483 0.80 -0.4
127,496 - GFF4483 0.80 -0.2
127,496 - GFF4483 0.80 -0.2
127,496 - GFF4483 0.80 +0.4
127,496 - GFF4483 0.80 +1.1
127,496 - GFF4483 0.80 +0.2
127,496 - GFF4483 0.80 +0.6
127,496 - GFF4483 0.80 +0.4
127,800 + +0.1
127,800 + -0.6
127,800 + -0.1
127,899 + GFF4484 0.24 -0.3
127,899 + GFF4484 0.24 +0.8
127,900 - GFF4484 0.24 -0.2
127,900 - GFF4484 0.24 +0.4
127,900 - GFF4484 0.24 +1.1
128,169 + GFF4484 0.73 +0.7
128,169 + GFF4484 0.73 +0.5
128,170 - GFF4484 0.73 -0.2
128,170 - GFF4484 0.73 +0.5
128,170 - GFF4484 0.73 -0.9
128,209 + GFF4484 0.80 -1.4
128,209 + GFF4484 0.80 -0.9
128,209 + GFF4484 0.80 +0.2
128,209 + GFF4484 0.80 -0.4
128,209 + GFF4484 0.80 +0.0
128,210 - GFF4484 0.80 -0.5
128,210 - GFF4484 0.80 -0.5
128,210 - GFF4484 0.80 +1.4
128,210 - GFF4484 0.80 +1.1
128,210 - GFF4484 0.80 +0.5
128,371 + -0.2
128,371 + +0.6
128,371 + -1.5
128,371 + +0.5
128,372 - -1.1
128,372 - +1.4
128,408 + +2.2
128,408 + +3.3
128,408 + +3.0
128,408 + +3.2
128,409 - +2.8
128,409 - +2.2
128,412 + +3.6
128,412 + +3.1
128,412 + +2.9
128,412 + +3.0
128,412 + +2.7
128,412 + +3.2
128,413 - +2.3
128,413 - +2.4
128,785 + GFF4485 0.25 +2.5
128,785 + GFF4485 0.25 +3.1
128,785 + GFF4485 0.25 +3.3
128,785 + GFF4485 0.25 +2.9
128,785 + GFF4485 0.25 +2.7
128,785 + GFF4485 0.25 +3.2
128,785 + GFF4485 0.25 +3.0
128,785 + GFF4485 0.25 +3.2
128,785 + GFF4485 0.25 +2.9
128,785 + GFF4485 0.25 +2.3
128,785 + GFF4485 0.25 +3.5
128,785 + GFF4485 0.25 +3.6
128,785 + GFF4485 0.25 +3.0
128,785 + GFF4485 0.25 +2.7
128,785 + GFF4485 0.25 +3.1
128,785 + GFF4485 0.25 +2.5
128,785 + GFF4485 0.25 +2.9
128,786 - GFF4485 0.25 +3.2
128,786 - GFF4485 0.25 +1.9
128,786 - GFF4485 0.25 +3.5
128,786 - GFF4485 0.25 +3.1
128,786 - GFF4485 0.25 +3.5
128,786 - GFF4485 0.25 +3.0
128,786 - GFF4485 0.25 +2.9
128,786 - GFF4485 0.25 +3.9
128,786 - GFF4485 0.25 +2.4
128,786 - GFF4485 0.25 +3.0
128,786 - GFF4485 0.25 +2.9
128,786 - GFF4485 0.25 +2.8
128,786 - GFF4485 0.25 +2.7
128,786 - GFF4485 0.25 +2.3
128,786 - GFF4485 0.25 +2.6
128,797 + GFF4485 0.26 +2.2
128,797 + GFF4485 0.26 +3.4
128,797 + GFF4485 0.26 +2.7
128,797 + GFF4485 0.26 +2.5
128,797 + GFF4485 0.26 +3.1
128,797 + GFF4485 0.26 +2.9
128,797 + GFF4485 0.26 +1.9
128,797 + GFF4485 0.26 +2.3
128,797 + GFF4485 0.26 +1.9
128,797 + GFF4485 0.26 +3.2
128,797 + GFF4485 0.26 +1.9
128,797 + GFF4485 0.26 +3.8
128,797 + GFF4485 0.26 +3.6
128,797 + GFF4485 0.26 +3.0
128,797 + GFF4485 0.26 +3.0
128,797 + GFF4485 0.26 +3.1
128,797 + GFF4485 0.26 +3.8
128,797 + GFF4485 0.26 +3.2
128,797 + GFF4485 0.26 +2.7
128,797 + GFF4485 0.26 +2.9
128,797 + GFF4485 0.26 +3.0
128,797 + GFF4485 0.26 +2.9
128,797 + GFF4485 0.26 +3.2
128,797 + GFF4485 0.26 +3.1
128,797 + GFF4485 0.26 +3.4
128,797 + GFF4485 0.26 +3.0
128,797 + GFF4485 0.26 +2.8
128,798 - GFF4485 0.26 +2.0
128,798 - GFF4485 0.26 +2.6
128,798 - GFF4485 0.26 +2.9
128,798 - GFF4485 0.26 +4.1
128,798 - GFF4485 0.26 +1.9
128,798 - GFF4485 0.26 +1.9
128,798 - GFF4485 0.26 +3.1
128,798 - GFF4485 0.26 +3.4
128,798 - GFF4485 0.26 +2.6
128,798 - GFF4485 0.26 +2.8
128,798 - GFF4485 0.26 +2.9
128,798 - GFF4485 0.26 +3.2
128,798 - GFF4485 0.26 +2.7
128,798 - GFF4485 0.26 +3.1
128,798 - GFF4485 0.26 +3.3
128,798 - GFF4485 0.26 +3.0
128,798 - GFF4485 0.26 +2.7
128,798 - GFF4485 0.26 +2.9
128,798 - GFF4485 0.26 +2.5
129,247 + GFF4485 0.53 +4.1
129,247 + GFF4485 0.53 +2.8
129,247 + GFF4485 0.53 +2.9
129,247 + GFF4485 0.53 +2.9
129,247 + GFF4485 0.53 +3.3
129,248 - GFF4485 0.53 +2.8
129,248 - GFF4485 0.53 +3.6
129,248 - GFF4485 0.53 +1.2
129,248 - GFF4485 0.53 +3.0
129,248 - GFF4485 0.53 +3.0
129,248 - GFF4485 0.53 +3.1
129,295 + GFF4485 0.56 +1.8
129,295 + GFF4485 0.56 +2.0
129,295 + GFF4485 0.56 +2.9
129,295 + GFF4485 0.56 +2.4
129,296 - GFF4485 0.56 +2.1
129,296 - GFF4485 0.56 +2.6
129,296 - GFF4485 0.56 +1.4
129,296 - GFF4485 0.56 +2.5
129,296 - GFF4485 0.56 +1.9

Or see this region's nucleotide sequence