Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4456 and GFF4457 overlap by 4 nucleotides GFF4457 and GFF4458 overlap by 35 nucleotides GFF4458 and GFF4459 are separated by 21 nucleotides GFF4459 and GFF4460 are separated by 15 nucleotides
GFF4456 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 97,598 to 98,470
GFF4456
GFF4457 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 98,467 to 99,210
GFF4457
GFF4458 - hypothetical protein, at 99,176 to 99,580
GFF4458
GFF4459 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 99,602 to 100,465
GFF4459
GFF4460 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 100,481 to 101,470
GFF4460
Position (kb) 99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.277 kb on - strand, within GFF4456 at 98.277 kb on - strand, within GFF4456 at 98.277 kb on - strand, within GFF4456 at 98.277 kb on - strand, within GFF4456 at 98.656 kb on + strand, within GFF4457 at 98.656 kb on + strand, within GFF4457 at 98.990 kb on - strand, within GFF4457 at 99.046 kb on + strand, within GFF4457 at 99.046 kb on + strand, within GFF4457 at 99.046 kb on + strand, within GFF4457 at 99.047 kb on - strand, within GFF4457 at 99.049 kb on + strand, within GFF4457 at 99.050 kb on - strand, within GFF4457 at 99.120 kb on + strand, within GFF4457 at 99.151 kb on + strand at 99.261 kb on + strand, within GFF4458 at 99.261 kb on + strand, within GFF4458 at 99.261 kb on + strand, within GFF4458 at 99.262 kb on - strand, within GFF4458 at 99.262 kb on - strand, within GFF4458 at 99.351 kb on + strand, within GFF4458 at 99.351 kb on + strand, within GFF4458 at 99.351 kb on + strand, within GFF4458 at 99.352 kb on - strand, within GFF4458 at 99.352 kb on - strand, within GFF4458 at 99.441 kb on + strand, within GFF4458 at 99.441 kb on + strand, within GFF4458 at 99.441 kb on + strand, within GFF4458 at 99.442 kb on - strand, within GFF4458 at 99.442 kb on - strand, within GFF4458 at 99.442 kb on - strand, within GFF4458 at 99.442 kb on - strand, within GFF4458 at 99.442 kb on - strand, within GFF4458 at 99.442 kb on - strand, within GFF4458 at 99.442 kb on - strand, within GFF4458 at 99.442 kb on - strand, within GFF4458 at 99.587 kb on + strand at 99.588 kb on - strand at 99.601 kb on + strand at 99.601 kb on + strand at 99.601 kb on + strand at 99.602 kb on - strand at 99.602 kb on - strand at 99.602 kb on - strand at 99.674 kb on + strand at 99.674 kb on + strand at 99.674 kb on + strand at 99.675 kb on - strand at 99.675 kb on - strand at 99.707 kb on + strand, within GFF4459 at 99.707 kb on + strand, within GFF4459 at 99.708 kb on - strand, within GFF4459 at 99.708 kb on - strand, within GFF4459 at 99.708 kb on - strand, within GFF4459 at 99.708 kb on - strand, within GFF4459 at 99.863 kb on + strand, within GFF4459 at 100.256 kb on + strand, within GFF4459 at 100.284 kb on + strand, within GFF4459 at 100.284 kb on + strand, within GFF4459 at 100.284 kb on + strand, within GFF4459 at 100.285 kb on - strand, within GFF4459 at 100.285 kb on - strand, within GFF4459
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 98,276 + GFF4456 0.78 -0.4 98,276 + GFF4456 0.78 -0.3 98,276 + GFF4456 0.78 -0.3 98,276 + GFF4456 0.78 +1.5 98,276 + GFF4456 0.78 -0.1 98,276 + GFF4456 0.78 -0.2 98,276 + GFF4456 0.78 -1.6 98,276 + GFF4456 0.78 -0.6 98,277 - GFF4456 0.78 -1.5 98,277 - GFF4456 0.78 -0.6 98,277 - GFF4456 0.78 +0.9 98,277 - GFF4456 0.78 +2.5 98,656 + GFF4457 0.25 -0.2 98,656 + GFF4457 0.25 -0.4 98,990 - GFF4457 0.70 -1.1 99,046 + GFF4457 0.78 -0.1 99,046 + GFF4457 0.78 +0.5 99,046 + GFF4457 0.78 +0.9 99,047 - GFF4457 0.78 -0.7 99,049 + GFF4457 0.78 +0.9 99,050 - GFF4457 0.78 -0.8 99,120 + GFF4457 0.88 -0.4 99,151 + -0.4 99,261 + GFF4458 0.21 +0.5 99,261 + GFF4458 0.21 -1.1 99,261 + GFF4458 0.21 -0.5 99,262 - GFF4458 0.21 -1.7 99,262 - GFF4458 0.21 -0.5 99,351 + GFF4458 0.43 -0.4 99,351 + GFF4458 0.43 -2.4 99,351 + GFF4458 0.43 -0.5 99,352 - GFF4458 0.43 -0.8 99,352 - GFF4458 0.43 -0.4 99,441 + GFF4458 0.65 -0.3 99,441 + GFF4458 0.65 -0.9 99,441 + GFF4458 0.65 -0.1 99,442 - GFF4458 0.66 +0.2 99,442 - GFF4458 0.66 -0.7 99,442 - GFF4458 0.66 -0.3 99,442 - GFF4458 0.66 -0.8 99,442 - GFF4458 0.66 +0.1 99,442 - GFF4458 0.66 -0.1 99,442 - GFF4458 0.66 -2.0 99,442 - GFF4458 0.66 -0.6 99,587 + -0.6 99,588 - -0.1 99,601 + -0.5 99,601 + +0.9 99,601 + +0.1 99,602 - -0.9 99,602 - -0.4 99,602 - -0.1 99,674 + -0.3 99,674 + +1.2 99,674 + -0.5 99,675 - -1.3 99,675 - -0.9 99,707 + GFF4459 0.12 +0.4 99,707 + GFF4459 0.12 +0.1 99,708 - GFF4459 0.12 -1.1 99,708 - GFF4459 0.12 -0.5 99,708 - GFF4459 0.12 -1.3 99,708 - GFF4459 0.12 +0.1 99,863 + GFF4459 0.30 -0.6 100,256 + GFF4459 0.76 +1.1 100,284 + GFF4459 0.79 +0.4 100,284 + GFF4459 0.79 +0.5 100,284 + GFF4459 0.79 -1.1 100,285 - GFF4459 0.79 +0.4 100,285 - GFF4459 0.79 -0.3
Or see this region's nucleotide sequence