Strain Fitness in Variovorax sp. SCN45 around GFF4420

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4418 and GFF4419 are separated by 12 nucleotidesGFF4419 and GFF4420 overlap by 4 nucleotidesGFF4420 and GFF4421 are separated by 12 nucleotidesGFF4421 and GFF4422 overlap by 4 nucleotides GFF4418 - Conjugative transfer protein TrbJ, at 55,153 to 55,908 GFF4418 GFF4419 - Conjugative transfer protein TrbK, at 55,921 to 56,205 GFF4419 GFF4420 - Conjugative transfer protein TrbL, at 56,202 to 57,581 GFF4420 GFF4421 - Conjugative transfer protein TrbF, at 57,594 to 58,298 GFF4421 GFF4422 - Conjugative transfer protein TrbG, at 58,295 to 59,293 GFF4422 Position (kb) 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 55.468 kb on + strand, within GFF4418at 55.468 kb on + strand, within GFF4418at 55.468 kb on + strand, within GFF4418at 55.468 kb on + strand, within GFF4418at 55.468 kb on + strand, within GFF4418at 55.508 kb on - strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.733 kb on + strand, within GFF4418at 55.733 kb on + strand, within GFF4418at 55.734 kb on - strand, within GFF4418at 55.766 kb on + strand, within GFF4418at 55.767 kb on - strand, within GFF4418at 55.873 kb on + strandat 55.873 kb on + strandat 55.873 kb on + strandat 55.873 kb on + strandat 55.874 kb on - strandat 55.874 kb on - strandat 55.897 kb on + strandat 55.897 kb on + strandat 55.898 kb on - strandat 56.141 kb on - strand, within GFF4419at 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.247 kb on - strandat 56.247 kb on - strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.341 kb on - strand, within GFF4420at 56.341 kb on - strand, within GFF4420at 56.341 kb on - strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.410 kb on - strand, within GFF4420at 56.410 kb on - strand, within GFF4420at 56.410 kb on - strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.561 kb on - strand, within GFF4420at 56.561 kb on - strand, within GFF4420at 56.860 kb on + strand, within GFF4420at 56.860 kb on + strand, within GFF4420at 56.860 kb on + strand, within GFF4420at 56.861 kb on - strand, within GFF4420at 56.861 kb on - strand, within GFF4420at 57.579 kb on + strandat 57.579 kb on + strandat 57.579 kb on + strandat 57.579 kb on + strandat 57.580 kb on - strandat 57.580 kb on - strandat 57.580 kb on - strandat 57.580 kb on - strandat 57.580 kb on - strandat 57.580 kb on - strandat 57.622 kb on - strandat 57.651 kb on + strandat 57.651 kb on + strandat 57.652 kb on - strandat 57.652 kb on - strandat 57.652 kb on - strandat 57.670 kb on + strand, within GFF4421at 57.670 kb on + strand, within GFF4421at 57.670 kb on + strand, within GFF4421at 57.670 kb on + strand, within GFF4421at 57.670 kb on + strand, within GFF4421at 57.670 kb on + strand, within GFF4421at 57.671 kb on - strand, within GFF4421at 57.671 kb on - strand, within GFF4421at 57.671 kb on - strand, within GFF4421at 57.671 kb on - strand, within GFF4421at 57.671 kb on - strand, within GFF4421at 57.671 kb on - strand, within GFF4421at 57.671 kb on - strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.804 kb on + strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.805 kb on - strand, within GFF4421at 57.864 kb on + strand, within GFF4421at 57.972 kb on + strand, within GFF4421at 57.973 kb on - strand, within GFF4421at 57.978 kb on + strand, within GFF4421at 57.978 kb on + strand, within GFF4421at 57.979 kb on - strand, within GFF4421at 57.979 kb on - strand, within GFF4421at 58.014 kb on + strand, within GFF4421at 58.015 kb on - strand, within GFF4421at 58.015 kb on - strand, within GFF4421at 58.131 kb on + strand, within GFF4421at 58.131 kb on + strand, within GFF4421at 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.239 kb on + strandat 58.240 kb on - strandat 58.240 kb on - strandat 58.240 kb on - strandat 58.240 kb on - strandat 58.240 kb on - strandat 58.240 kb on - strandat 58.240 kb on - strandat 58.240 kb on - strandat 58.240 kb on - strandat 58.473 kb on + strand, within GFF4422at 58.473 kb on + strand, within GFF4422at 58.473 kb on + strand, within GFF4422at 58.473 kb on + strand, within GFF4422at 58.473 kb on + strand, within GFF4422at 58.473 kb on + strand, within GFF4422at 58.474 kb on - strand, within GFF4422at 58.474 kb on - strand, within GFF4422at 58.474 kb on - strand, within GFF4422at 58.474 kb on - strand, within GFF4422at 58.474 kb on - strand, within GFF4422at 58.474 kb on - strand, within GFF4422

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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55,468 + GFF4418 0.42 +1.6
55,468 + GFF4418 0.42 -1.0
55,468 + GFF4418 0.42 +0.2
55,468 + GFF4418 0.42 -1.1
55,468 + GFF4418 0.42 +0.6
55,508 - GFF4418 0.47 -0.8
55,519 + GFF4418 0.48 -0.3
55,519 + GFF4418 0.48 -0.3
55,519 + GFF4418 0.48 +0.3
55,519 + GFF4418 0.48 -2.5
55,519 + GFF4418 0.48 -0.6
55,520 - GFF4418 0.49 -0.8
55,520 - GFF4418 0.49 -1.3
55,520 - GFF4418 0.49 -0.1
55,520 - GFF4418 0.49 -0.4
55,520 - GFF4418 0.49 -0.6
55,520 - GFF4418 0.49 -1.3
55,520 - GFF4418 0.49 -2.2
55,549 + GFF4418 0.52 +0.1
55,549 + GFF4418 0.52 -0.8
55,549 + GFF4418 0.52 -0.8
55,549 + GFF4418 0.52 -0.1
55,549 + GFF4418 0.52 +1.4
55,549 + GFF4418 0.52 +1.9
55,549 + GFF4418 0.52 -0.9
55,549 + GFF4418 0.52 +0.1
55,550 - GFF4418 0.53 -1.0
55,550 - GFF4418 0.53 -0.5
55,550 - GFF4418 0.53 +1.9
55,550 - GFF4418 0.53 +0.2
55,550 - GFF4418 0.53 -0.4
55,550 - GFF4418 0.53 +0.2
55,550 - GFF4418 0.53 +0.9
55,550 - GFF4418 0.53 +0.2
55,550 - GFF4418 0.53 -0.7
55,550 - GFF4418 0.53 -0.8
55,550 - GFF4418 0.53 +0.4
55,550 - GFF4418 0.53 -0.1
55,550 - GFF4418 0.53 -0.2
55,550 - GFF4418 0.53 -0.4
55,550 - GFF4418 0.53 +0.2
55,733 + GFF4418 0.77 -0.2
55,733 + GFF4418 0.77 +0.2
55,734 - GFF4418 0.77 +0.3
55,766 + GFF4418 0.81 -1.6
55,767 - GFF4418 0.81 -0.1
55,873 + -0.8
55,873 + -0.1
55,873 + +0.6
55,873 + +0.6
55,874 - +0.9
55,874 - +2.5
55,897 + +0.3
55,897 + -1.8
55,898 - -0.5
56,141 - GFF4419 0.77 -1.1
56,246 + -0.6
56,246 + -3.0
56,246 + +0.6
56,246 + +0.5
56,246 + +0.7
56,246 + +0.2
56,246 + -0.4
56,247 - +0.3
56,247 - -0.2
56,250 + +0.0
56,250 + -0.1
56,250 + -0.0
56,250 + -0.9
56,250 + +0.1
56,250 + -0.7
56,250 + +0.8
56,250 + +0.7
56,250 + -0.8
56,250 + +0.3
56,251 - +0.3
56,251 - -0.7
56,251 - +0.3
56,251 - -0.1
56,251 - -0.2
56,251 - -1.1
56,251 - +0.0
56,251 - +0.2
56,251 - -0.4
56,251 - -1.4
56,340 + GFF4420 0.10 -0.2
56,340 + GFF4420 0.10 +0.0
56,340 + GFF4420 0.10 -1.1
56,340 + GFF4420 0.10 -0.1
56,340 + GFF4420 0.10 -0.5
56,340 + GFF4420 0.10 -0.1
56,341 - GFF4420 0.10 -2.1
56,341 - GFF4420 0.10 +0.3
56,341 - GFF4420 0.10 +0.6
56,409 + GFF4420 0.15 -1.1
56,409 + GFF4420 0.15 -0.1
56,409 + GFF4420 0.15 -0.5
56,409 + GFF4420 0.15 -0.9
56,409 + GFF4420 0.15 +0.7
56,409 + GFF4420 0.15 -0.4
56,409 + GFF4420 0.15 -2.1
56,410 - GFF4420 0.15 -0.0
56,410 - GFF4420 0.15 -0.4
56,410 - GFF4420 0.15 -1.2
56,427 + GFF4420 0.16 -0.6
56,427 + GFF4420 0.16 -0.3
56,427 + GFF4420 0.16 -0.1
56,427 + GFF4420 0.16 +0.1
56,427 + GFF4420 0.16 -0.3
56,427 + GFF4420 0.16 +0.1
56,427 + GFF4420 0.16 -0.8
56,427 + GFF4420 0.16 -0.9
56,428 - GFF4420 0.16 -0.8
56,428 - GFF4420 0.16 -0.7
56,428 - GFF4420 0.16 +0.8
56,428 - GFF4420 0.16 -0.5
56,428 - GFF4420 0.16 -0.5
56,428 - GFF4420 0.16 +0.4
56,428 - GFF4420 0.16 -0.1
56,428 - GFF4420 0.16 -1.5
56,428 - GFF4420 0.16 -0.1
56,428 - GFF4420 0.16 +0.8
56,560 + GFF4420 0.26 -1.0
56,560 + GFF4420 0.26 -0.3
56,560 + GFF4420 0.26 -0.3
56,560 + GFF4420 0.26 -0.8
56,560 + GFF4420 0.26 -0.3
56,560 + GFF4420 0.26 -0.2
56,561 - GFF4420 0.26 +1.1
56,561 - GFF4420 0.26 +0.0
56,860 + GFF4420 0.48 +0.5
56,860 + GFF4420 0.48 -0.8
56,860 + GFF4420 0.48 +1.4
56,861 - GFF4420 0.48 -0.2
56,861 - GFF4420 0.48 +0.0
57,579 + -1.1
57,579 + +0.4
57,579 + -0.2
57,579 + -2.0
57,580 - +4.1
57,580 - -1.4
57,580 - -0.3
57,580 - +0.5
57,580 - +1.4
57,580 - -0.5
57,622 - -0.1
57,651 + +0.2
57,651 + -0.2
57,652 - -1.5
57,652 - -0.4
57,652 - -1.1
57,670 + GFF4421 0.11 +0.5
57,670 + GFF4421 0.11 -0.2
57,670 + GFF4421 0.11 +0.6
57,670 + GFF4421 0.11 -0.5
57,670 + GFF4421 0.11 -0.2
57,670 + GFF4421 0.11 -1.4
57,671 - GFF4421 0.11 +0.5
57,671 - GFF4421 0.11 +0.7
57,671 - GFF4421 0.11 -0.4
57,671 - GFF4421 0.11 +0.9
57,671 - GFF4421 0.11 -0.4
57,671 - GFF4421 0.11 -0.8
57,671 - GFF4421 0.11 -0.6
57,804 + GFF4421 0.30 -1.2
57,804 + GFF4421 0.30 -0.9
57,804 + GFF4421 0.30 -1.4
57,804 + GFF4421 0.30 -1.1
57,804 + GFF4421 0.30 -1.0
57,804 + GFF4421 0.30 -0.8
57,804 + GFF4421 0.30 -1.4
57,804 + GFF4421 0.30 +0.1
57,804 + GFF4421 0.30 +0.2
57,804 + GFF4421 0.30 +0.9
57,804 + GFF4421 0.30 -1.6
57,805 - GFF4421 0.30 -1.1
57,805 - GFF4421 0.30 -0.1
57,805 - GFF4421 0.30 -0.6
57,805 - GFF4421 0.30 -0.2
57,805 - GFF4421 0.30 +0.4
57,805 - GFF4421 0.30 -0.2
57,805 - GFF4421 0.30 -0.4
57,805 - GFF4421 0.30 -0.1
57,805 - GFF4421 0.30 -0.7
57,805 - GFF4421 0.30 +0.7
57,864 + GFF4421 0.38 -0.8
57,972 + GFF4421 0.54 -0.4
57,973 - GFF4421 0.54 -1.4
57,978 + GFF4421 0.54 -0.2
57,978 + GFF4421 0.54 -0.1
57,979 - GFF4421 0.55 +0.6
57,979 - GFF4421 0.55 -1.4
58,014 + GFF4421 0.60 -0.5
58,015 - GFF4421 0.60 -0.9
58,015 - GFF4421 0.60 -0.4
58,131 + GFF4421 0.76 +0.2
58,131 + GFF4421 0.76 +0.4
58,239 + +0.1
58,239 + -0.0
58,239 + +0.7
58,239 + +0.1
58,239 + -0.9
58,239 + -0.8
58,239 + +0.2
58,239 + -1.1
58,239 + -0.8
58,239 + -0.1
58,239 + +0.4
58,239 + -0.9
58,239 + -2.1
58,240 - -0.2
58,240 - -1.1
58,240 - +0.2
58,240 - -1.0
58,240 - -0.2
58,240 - +0.5
58,240 - -2.9
58,240 - +0.2
58,240 - +3.3
58,473 + GFF4422 0.18 -1.3
58,473 + GFF4422 0.18 +0.1
58,473 + GFF4422 0.18 +1.2
58,473 + GFF4422 0.18 -2.7
58,473 + GFF4422 0.18 -0.3
58,473 + GFF4422 0.18 -0.3
58,474 - GFF4422 0.18 +0.4
58,474 - GFF4422 0.18 -0.3
58,474 - GFF4422 0.18 -0.5
58,474 - GFF4422 0.18 -1.0
58,474 - GFF4422 0.18 -0.1
58,474 - GFF4422 0.18 -1.5

Or see this region's nucleotide sequence