Strain Fitness in Variovorax sp. SCN45 around GFF4380

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
10,114	-				-0.8
10,114	-				-0.5
10,179	+				+0.6
10,179	+				+0.2
10,179	+				-0.6
10,179	+				-0.4
10,179	+				-1.6
10,179	+				-0.1
10,179	+				+1.1
10,180	-				-0.6
10,180	-				+0.3
10,180	-				+0.0
10,224	+				-0.9
10,224	+				+0.4
10,224	+				-1.4
10,225	-				-0.2
10,225	-				-0.7
10,225	-				-0.2
10,486	+				-0.4
10,487	-				+0.1
10,644	+				+0.9
10,644	+				-0.7
10,645	-				-1.1
10,645	-				+0.4
10,645	-				+0.0
10,645	-				+0.1
10,834	+		GFF4379	0.62	+0.5
10,834	+		GFF4379	0.62	-0.1
10,834	+		GFF4379	0.62	-1.2
10,834	+		GFF4379	0.62	-0.9
10,834	+		GFF4379	0.62	+0.0
10,834	+		GFF4379	0.62	+0.4
10,834	+		GFF4379	0.62	-0.4
10,834	+		GFF4379	0.62	+0.0
10,834	+		GFF4379	0.62	+1.4
10,834	+		GFF4379	0.62	-0.2
10,834	+		GFF4379	0.62	-0.4
10,834	+		GFF4379	0.62	-0.6
10,834	+		GFF4379	0.62	-0.7
10,834	+		GFF4379	0.62	+0.3
10,834	+		GFF4379	0.62	+1.4
10,834	+		GFF4379	0.62	+0.4
10,834	+		GFF4379	0.62	-0.2
10,834	+		GFF4379	0.62	-0.2
10,835	-		GFF4379	0.62	-0.5
10,835	-		GFF4379	0.62	+0.4
10,835	-		GFF4379	0.62	-0.1
10,835	-		GFF4379	0.62	-0.4
10,835	-		GFF4379	0.62	-0.9
10,835	-		GFF4379	0.62	-0.1
10,835	-		GFF4379	0.62	+0.4
10,835	-		GFF4379	0.62	-0.6
10,835	-		GFF4379	0.62	-1.1
10,835	-		GFF4379	0.62	-1.1
10,835	-		GFF4379	0.62	-0.9
10,835	-		GFF4379	0.62	-1.0
10,835	-		GFF4379	0.62	-0.4
10,835	-		GFF4379	0.62	-0.6
10,835	-		GFF4379	0.62	+0.4
10,835	-		GFF4379	0.62	-0.6
10,835	-		GFF4379	0.62	+0.2
10,835	-		GFF4379	0.62	-1.2
10,835	-		GFF4379	0.62	+1.4
10,835	-		GFF4379	0.62	+0.7
10,835	-		GFF4379	0.62	+0.5
10,835	-		GFF4379	0.62	-0.9
10,879	+		GFF4379	0.76	-0.2
10,879	+		GFF4379	0.76	-0.9
10,879	+		GFF4379	0.76	-0.9
10,879	+		GFF4379	0.76	+0.9
10,879	+		GFF4379	0.76	-1.8
10,879	+		GFF4379	0.76	+0.9
10,879	+		GFF4379	0.76	-0.0
10,879	+		GFF4379	0.76	-1.8
10,880	-		GFF4379	0.77	+0.4
10,880	-		GFF4379	0.77	-0.1
10,880	-		GFF4379	0.77	-1.2
10,880	-		GFF4379	0.77	-0.1
10,880	-		GFF4379	0.77	+0.2
10,908	+		GFF4379	0.85	+0.2
10,908	+		GFF4379	0.85	+0.6
10,908	+		GFF4379	0.85	-0.9
10,908	+		GFF4379	0.85	-0.1
10,909	-		GFF4379	0.86	+1.4
11,026	-				-0.4
11,026	-				+1.1
11,026	-				-0.4
11,026	-				+0.5
11,115	+		GFF4380	0.33	-0.4
11,115	+		GFF4380	0.33	-0.3
11,115	+		GFF4380	0.33	-1.6
11,144	+		GFF4380	0.43	+1.2
11,144	+		GFF4380	0.43	+0.2
11,144	+		GFF4380	0.43	+0.5
11,144	+		GFF4380	0.43	+0.5
11,144	+		GFF4380	0.43	+1.7
11,144	+		GFF4380	0.43	+0.1
11,144	+		GFF4380	0.43	-0.2
11,144	+		GFF4380	0.43	-1.4
11,144	+		GFF4380	0.43	-0.2
11,144	+		GFF4380	0.43	+0.0
11,144	+		GFF4380	0.43	+0.8
11,144	+		GFF4380	0.43	-0.1
11,144	+		GFF4380	0.43	+2.3
11,145	-		GFF4380	0.44	-0.8
11,145	-		GFF4380	0.44	-0.2
11,145	-		GFF4380	0.44	-0.4
11,145	-		GFF4380	0.44	-0.2
11,145	-		GFF4380	0.44	-0.8
11,145	-		GFF4380	0.44	-0.2
11,145	-		GFF4380	0.44	-0.2
11,145	-		GFF4380	0.44	-0.8
11,145	-		GFF4380	0.44	+0.4
11,218	+		GFF4380	0.70	-0.1
11,218	+		GFF4380	0.70	-0.0
11,218	+		GFF4380	0.70	+0.9
11,218	+		GFF4380	0.70	-0.9
11,218	+		GFF4380	0.70	-0.0
11,218	+		GFF4380	0.70	-0.4
11,218	+		GFF4380	0.70	-0.6
11,218	+		GFF4380	0.70	-0.4
11,218	+		GFF4380	0.70	-1.4
11,218	+		GFF4380	0.70	-0.4
11,218	+		GFF4380	0.70	-0.1
11,218	+		GFF4380	0.70	-1.1
11,219	-		GFF4380	0.71	-0.1
11,219	-		GFF4380	0.71	-1.1
11,219	-		GFF4380	0.71	-1.3
11,219	-		GFF4380	0.71	-0.5
11,219	-		GFF4380	0.71	+0.2
11,219	-		GFF4380	0.71	-0.9
11,219	-		GFF4380	0.71	+0.1
11,219	-		GFF4380	0.71	+0.3
11,219	-		GFF4380	0.71	+0.9
11,219	-		GFF4380	0.71	-1.2
11,219	-		GFF4380	0.71	-1.4
11,219	-		GFF4380	0.71	-0.5
11,219	-		GFF4380	0.71	+1.5
11,220	+		GFF4380	0.71	-0.6
11,220	+		GFF4380	0.71	+0.2
11,220	+		GFF4380	0.71	+1.4
11,220	+		GFF4380	0.71	+0.1
11,220	+		GFF4380	0.71	-0.1
11,220	+		GFF4380	0.71	+0.6
11,220	+		GFF4380	0.71	-0.6
11,220	+		GFF4380	0.71	-0.1
11,220	+		GFF4380	0.71	-0.7
11,220	+		GFF4380	0.71	+0.3
11,220	+		GFF4380	0.71	-1.3
11,220	+		GFF4380	0.71	-1.2
11,220	+		GFF4380	0.71	-0.2
11,220	+		GFF4380	0.71	-1.2
11,220	+		GFF4380	0.71	-0.6
11,220	+		GFF4380	0.71	-0.1
11,220	+		GFF4380	0.71	+0.4
11,220	+		GFF4380	0.71	-1.0
11,220	+		GFF4380	0.71	-1.6
11,220	+		GFF4380	0.71	+0.9
11,220	+		GFF4380	0.71	+1.6
11,220	+		GFF4380	0.71	-0.1
11,220	+		GFF4380	0.71	-0.8
11,220	+		GFF4380	0.71	+0.1
11,220	+		GFF4380	0.71	-1.4
11,220	+		GFF4380	0.71	+0.2
11,220	+		GFF4380	0.71	-0.6
11,220	+		GFF4380	0.71	-0.2
11,220	+		GFF4380	0.71	-0.1
11,220	+		GFF4380	0.71	-1.8
11,220	+		GFF4380	0.71	+1.2
11,220	+		GFF4380	0.71	+1.2
11,220	+		GFF4380	0.71	-0.7
11,220	+		GFF4380	0.71	-0.1
11,220	+		GFF4380	0.71	-1.6
11,221	-		GFF4380	0.71	-1.1
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	+0.4
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	-0.6
11,221	-		GFF4380	0.71	-0.8
11,221	-		GFF4380	0.71	-0.5
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	+0.6
11,221	-		GFF4380	0.71	-1.5
11,221	-		GFF4380	0.71	+1.4
11,221	-		GFF4380	0.71	+0.0
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	+0.1
11,221	-		GFF4380	0.71	+0.4
11,221	-		GFF4380	0.71	+0.0
11,221	-		GFF4380	0.71	+0.6
11,221	-		GFF4380	0.71	+0.1
11,221	-		GFF4380	0.71	-1.1
11,221	-		GFF4380	0.71	-0.9
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	-1.8
11,221	-		GFF4380	0.71	+0.0
11,221	-		GFF4380	0.71	+1.1
11,221	-		GFF4380	0.71	+0.1
11,221	-		GFF4380	0.71	-0.8
11,221	-		GFF4380	0.71	-0.6
11,221	-		GFF4380	0.71	-0.3
11,221	-		GFF4380	0.71	-0.6
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	-0.7
11,221	-		GFF4380	0.71	-0.4
11,224	+		GFF4380	0.72	+2.9
11,224	+		GFF4380	0.72	-0.2
11,224	+		GFF4380	0.72	-0.6
11,224	+		GFF4380	0.72	-1.2
11,224	+		GFF4380	0.72	-0.5
11,224	+		GFF4380	0.72	+0.1
11,224	+		GFF4380	0.72	+0.7
11,224	+		GFF4380	0.72	-1.0
11,224	+		GFF4380	0.72	-0.8
11,225	-		GFF4380	0.73	+0.5
11,225	-		GFF4380	0.73	-0.0
11,225	-		GFF4380	0.73	-0.8
11,225	-		GFF4380	0.73	-0.3
11,225	-		GFF4380	0.73	-0.7
11,225	-		GFF4380	0.73	-0.2
11,225	-		GFF4380	0.73	-0.4
11,225	-		GFF4380	0.73	+0.4
11,225	-		GFF4380	0.73	-0.1
11,334	+				+0.4
11,380	-				-0.9
11,400	+				+1.4
11,410	+				-0.2
11,411	-				-0.8
11,411	-				+0.3
11,422	+				-1.5
11,422	+				+0.2
11,423	-				+0.6
11,449	-				+1.5
11,466	+				+0.4
11,466	+				+2.4
11,466	+				+0.4
11,467	-				-0.0
11,467	-				+1.2
11,467	-				-1.1
11,467	-				+0.1
11,518	+				-0.3
11,518	+				-0.5
11,518	+				-1.1
11,518	+				+0.4
11,518	+				+0.1
11,518	+				-1.9
11,518	+				+0.1
11,519	-				-0.9
11,519	-				-0.7
11,519	-				-0.9
11,544	+				-0.1
11,544	+				+0.4
11,544	+				+0.8
11,544	+				+0.4
11,544	+				+1.3
11,544	+				-0.9
11,544	+				+0.4
11,544	+				+0.1
11,544	+				-0.9
11,544	+				-2.4
11,544	+				+0.4
11,544	+				+0.1
11,544	+				-0.4
11,544	+				+0.9
11,545	-				-0.6
11,545	-				-0.4
11,545	-				-0.2
11,545	-				+4.3
11,545	-				+0.9
11,545	-				+1.9
11,545	-				-0.4
11,545	-				-0.2
11,545	-				-0.1
11,545	-				-0.6
11,777	+		GFF4381	0.40	-0.2
11,809	+		GFF4381	0.49	-0.0
11,809	+		GFF4381	0.49	-0.6
11,809	+		GFF4381	0.49	+0.1
11,809	+		GFF4381	0.49	+0.1
11,810	-		GFF4381	0.49	+0.1
11,810	-		GFF4381	0.49	-1.1
11,918	-		GFF4381	0.80	-1.9
11,918	-		GFF4381	0.80	-0.4
11,918	-		GFF4381	0.80	+0.4
11,918	-		GFF4381	0.80	-1.5
11,947	+		GFF4381	0.88	+0.4
11,947	+		GFF4381	0.88	-0.9
11,947	+		GFF4381	0.88	-0.8
11,947	+		GFF4381	0.88	-0.3
11,947	+		GFF4381	0.88	-0.1
11,947	+		GFF4381	0.88	-0.3
11,948	-		GFF4381	0.88	-0.1
11,948	-		GFF4381	0.88	-1.4
11,948	-		GFF4381	0.88	+0.3
11,948	-		GFF4381	0.88	-0.1
11,948	-		GFF4381	0.88	-0.8
11,948	-		GFF4381	0.88	-0.3
11,948	-		GFF4381	0.88	-1.3
12,030	+				-0.1
12,030	+				+0.7
12,030	+				-0.2
12,030	+				-0.3
12,030	+				-0.8
12,030	+				-0.6
12,030	+				+0.2
12,031	-				-0.7
12,031	-				-0.2
12,031	-				-0.8
12,034	+				-0.5
12,041	+				+0.2
12,041	+				-0.2
12,041	+				+1.9
12,041	+				+0.1
12,041	+				-0.5
12,041	+				-0.6
12,041	+				-1.0
12,041	+				-0.7
12,041	+				+0.6
12,042	-				-0.4
12,042	-				+1.2
12,042	-				-0.2
12,042	-				+0.7
12,233	+				-0.4
12,233	+				-0.2
12,233	+				+1.9
12,234	-				-0.5
12,234	-				-0.9
12,240	+				-0.3
12,240	+				+0.6
12,240	+				+0.6
12,241	-				-1.2
12,276	+				-2.1
12,276	+				+0.5
12,276	+				-0.5
12,276	+				-0.2
12,276	+				+0.3
12,276	+				-0.3
12,276	+				+0.0
12,277	-				-1.4