Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4373 and GFF4374 are separated by 472 nucleotides GFF4374 and GFF4375 are separated by 37 nucleotides
GFF4373 - FIG131328: Predicted ATP-dependent endonuclease of the OLD family, at 2,064 to 4,202
GFF4373
GFF4374 - UPF0758 family protein, at 4,675 to 5,184
GFF4374
GFF4375 - FIG00463055: hypothetical protein, at 5,222 to 6,013
GFF4375
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.706 kb on + strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.707 kb on - strand, within GFF4373 at 3.760 kb on + strand, within GFF4373 at 3.760 kb on + strand, within GFF4373 at 3.760 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.871 kb on + strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 3.872 kb on - strand, within GFF4373 at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.010 kb on + strand at 4.011 kb on - strand at 4.011 kb on - strand at 4.011 kb on - strand at 4.097 kb on + strand at 4.097 kb on + strand at 4.171 kb on + strand at 4.171 kb on + strand at 4.172 kb on - strand at 4.172 kb on - strand at 4.172 kb on - strand at 4.202 kb on + strand at 4.202 kb on + strand at 4.202 kb on + strand at 4.202 kb on + strand at 4.202 kb on + strand at 4.202 kb on + strand at 4.203 kb on - strand at 4.203 kb on - strand at 4.203 kb on - strand at 4.203 kb on - strand at 4.203 kb on - strand at 4.203 kb on - strand at 4.203 kb on - strand at 4.203 kb on - strand at 4.203 kb on - strand at 4.217 kb on + strand at 4.217 kb on + strand at 4.217 kb on + strand at 4.217 kb on + strand at 4.218 kb on - strand at 4.218 kb on - strand at 4.218 kb on - strand at 4.218 kb on - strand at 4.223 kb on + strand at 4.223 kb on + strand at 4.223 kb on + strand at 4.223 kb on + strand at 4.224 kb on - strand at 4.224 kb on - strand at 4.224 kb on - strand at 4.224 kb on - strand at 4.258 kb on + strand at 4.258 kb on + strand at 4.258 kb on + strand at 4.258 kb on + strand at 4.258 kb on + strand at 4.258 kb on + strand at 4.258 kb on + strand at 4.258 kb on + strand at 4.258 kb on + strand at 4.259 kb on - strand at 4.259 kb on - strand at 4.259 kb on - strand at 4.259 kb on - strand at 4.259 kb on - strand at 4.259 kb on - strand at 4.259 kb on - strand at 4.259 kb on - strand at 4.259 kb on - strand at 4.269 kb on + strand at 4.269 kb on + strand at 4.269 kb on + strand at 4.270 kb on - strand at 4.270 kb on - strand at 4.270 kb on - strand at 4.270 kb on - strand at 4.464 kb on + strand at 4.464 kb on + strand at 4.464 kb on + strand at 4.464 kb on + strand at 4.464 kb on + strand at 4.464 kb on + strand at 4.476 kb on - strand at 4.476 kb on - strand at 4.476 kb on - strand at 4.476 kb on - strand at 4.476 kb on - strand at 4.486 kb on + strand at 4.486 kb on + strand at 4.486 kb on + strand at 4.486 kb on + strand at 4.486 kb on + strand at 4.487 kb on - strand at 4.487 kb on - strand at 4.487 kb on - strand at 4.487 kb on - strand at 4.497 kb on + strand at 4.498 kb on - strand at 4.508 kb on + strand at 4.508 kb on + strand at 4.508 kb on + strand at 4.508 kb on + strand at 4.508 kb on + strand at 4.509 kb on - strand at 4.509 kb on - strand at 4.509 kb on - strand at 4.509 kb on - strand at 4.509 kb on - strand at 4.535 kb on + strand at 4.535 kb on + strand at 4.536 kb on - strand at 4.536 kb on - strand at 4.739 kb on - strand, within GFF4374 at 4.809 kb on + strand, within GFF4374 at 4.836 kb on - strand, within GFF4374 at 4.843 kb on + strand, within GFF4374 at 4.843 kb on + strand, within GFF4374 at 4.843 kb on + strand, within GFF4374 at 4.843 kb on + strand, within GFF4374 at 4.925 kb on - strand, within GFF4374 at 4.967 kb on - strand, within GFF4374 at 4.967 kb on - strand, within GFF4374 at 4.967 kb on - strand, within GFF4374 at 5.224 kb on - strand at 5.265 kb on + strand at 5.265 kb on + strand at 5.265 kb on + strand at 5.265 kb on + strand at 5.265 kb on + strand at 5.265 kb on + strand at 5.266 kb on - strand at 5.266 kb on - strand at 5.266 kb on - strand at 5.266 kb on - strand at 5.279 kb on + strand at 5.279 kb on + strand at 5.280 kb on - strand at 5.280 kb on - strand at 5.367 kb on + strand, within GFF4375 at 5.367 kb on + strand, within GFF4375 at 5.367 kb on + strand, within GFF4375 at 5.367 kb on + strand, within GFF4375 at 5.367 kb on + strand, within GFF4375 at 5.367 kb on + strand, within GFF4375 at 5.367 kb on + strand, within GFF4375 at 5.368 kb on - strand, within GFF4375 at 5.368 kb on - strand, within GFF4375 at 5.368 kb on - strand, within GFF4375 at 5.368 kb on - strand, within GFF4375 at 5.538 kb on + strand, within GFF4375 at 5.538 kb on + strand, within GFF4375 at 5.538 kb on + strand, within GFF4375 at 5.538 kb on + strand, within GFF4375 at 5.538 kb on + strand, within GFF4375 at 5.538 kb on + strand, within GFF4375 at 5.538 kb on + strand, within GFF4375 at 5.539 kb on - strand, within GFF4375 at 5.539 kb on - strand, within GFF4375 at 5.539 kb on - strand, within GFF4375 at 5.582 kb on + strand, within GFF4375 at 5.582 kb on + strand, within GFF4375 at 5.582 kb on + strand, within GFF4375 at 5.582 kb on + strand, within GFF4375 at 5.582 kb on + strand, within GFF4375 at 5.582 kb on + strand, within GFF4375 at 5.582 kb on + strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.583 kb on - strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.586 kb on + strand, within GFF4375 at 5.587 kb on - strand, within GFF4375 at 5.587 kb on - strand, within GFF4375 at 5.587 kb on - strand, within GFF4375 at 5.587 kb on - strand, within GFF4375 at 5.587 kb on - strand, within GFF4375 at 5.587 kb on - strand, within GFF4375 at 5.587 kb on - strand, within GFF4375 at 5.601 kb on + strand, within GFF4375 at 5.601 kb on + strand, within GFF4375 at 5.601 kb on + strand, within GFF4375 at 5.601 kb on + strand, within GFF4375 at 5.601 kb on + strand, within GFF4375 at 5.601 kb on + strand, within GFF4375 at 5.601 kb on + strand, within GFF4375 at 5.602 kb on + strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.602 kb on - strand, within GFF4375 at 5.643 kb on + strand, within GFF4375 at 5.643 kb on + strand, within GFF4375 at 5.644 kb on - strand, within GFF4375 at 5.758 kb on + strand, within GFF4375 at 5.759 kb on - strand, within GFF4375 at 5.880 kb on + strand, within GFF4375 at 5.880 kb on + strand, within GFF4375 at 5.881 kb on - strand, within GFF4375 at 5.881 kb on - strand, within GFF4375 at 5.881 kb on - strand, within GFF4375 at 5.964 kb on + strand at 5.964 kb on + strand at 5.965 kb on - strand at 5.965 kb on - strand at 5.965 kb on - strand at 6.050 kb on + strand at 6.050 kb on + strand at 6.051 kb on - strand at 6.066 kb on + strand at 6.066 kb on + strand at 6.066 kb on + strand at 6.066 kb on + strand at 6.066 kb on + strand at 6.066 kb on + strand at 6.067 kb on - strand at 6.067 kb on - strand at 6.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 3,706 + GFF4373 0.77 -0.9 3,706 + GFF4373 0.77 -0.6 3,706 + GFF4373 0.77 -0.1 3,706 + GFF4373 0.77 -0.4 3,706 + GFF4373 0.77 -0.2 3,706 + GFF4373 0.77 -0.5 3,706 + GFF4373 0.77 -0.2 3,706 + GFF4373 0.77 -0.7 3,706 + GFF4373 0.77 -0.4 3,706 + GFF4373 0.77 -0.4 3,706 + GFF4373 0.77 -0.2 3,706 + GFF4373 0.77 -0.4 3,706 + GFF4373 0.77 +0.4 3,706 + GFF4373 0.77 +0.9 3,706 + GFF4373 0.77 -1.1 3,706 + GFF4373 0.77 -0.4 3,707 - GFF4373 0.77 -0.1 3,707 - GFF4373 0.77 -0.3 3,707 - GFF4373 0.77 -0.4 3,707 - GFF4373 0.77 -1.3 3,707 - GFF4373 0.77 -1.3 3,707 - GFF4373 0.77 +0.2 3,707 - GFF4373 0.77 -0.4 3,707 - GFF4373 0.77 +0.9 3,707 - GFF4373 0.77 +0.3 3,707 - GFF4373 0.77 +0.1 3,707 - GFF4373 0.77 -1.1 3,707 - GFF4373 0.77 -0.2 3,760 + GFF4373 0.79 -1.2 3,760 + GFF4373 0.79 -0.5 3,760 + GFF4373 0.79 +0.0 3,871 + GFF4373 0.84 -0.2 3,871 + GFF4373 0.84 -0.4 3,871 + GFF4373 0.84 -0.6 3,871 + GFF4373 0.84 -1.9 3,871 + GFF4373 0.84 -0.6 3,871 + GFF4373 0.84 -0.3 3,871 + GFF4373 0.84 +1.9 3,871 + GFF4373 0.84 +0.1 3,871 + GFF4373 0.84 -0.1 3,871 + GFF4373 0.84 +0.0 3,871 + GFF4373 0.84 -0.5 3,871 + GFF4373 0.84 -0.4 3,871 + GFF4373 0.84 +1.4 3,872 - GFF4373 0.85 -0.4 3,872 - GFF4373 0.85 +0.6 3,872 - GFF4373 0.85 -1.4 3,872 - GFF4373 0.85 -0.8 3,872 - GFF4373 0.85 +0.8 3,872 - GFF4373 0.85 -0.9 3,872 - GFF4373 0.85 -1.6 3,872 - GFF4373 0.85 -0.3 3,872 - GFF4373 0.85 +0.9 3,872 - GFF4373 0.85 +0.4 3,872 - GFF4373 0.85 -0.5 3,872 - GFF4373 0.85 -0.8 3,872 - GFF4373 0.85 -0.1 4,002 + -0.8 4,002 + +0.1 4,002 + -0.3 4,002 + -0.0 4,003 - -1.9 4,003 - -1.3 4,003 - -0.6 4,003 - -1.0 4,003 - -0.6 4,003 - -0.6 4,003 - -0.9 4,003 - -0.2 4,003 - +0.3 4,003 - +0.4 4,010 + +0.6 4,011 - +1.4 4,011 - -0.5 4,011 - +0.4 4,097 + -0.6 4,097 + +1.9 4,171 + +0.5 4,171 + +0.7 4,172 - -0.2 4,172 - -2.2 4,172 - -0.1 4,202 + +0.1 4,202 + +0.7 4,202 + -0.9 4,202 + -0.9 4,202 + -0.6 4,202 + +0.1 4,203 - -2.7 4,203 - -0.5 4,203 - -1.2 4,203 - +1.2 4,203 - -0.3 4,203 - +0.4 4,203 - -0.3 4,203 - +0.4 4,203 - -0.5 4,217 + +1.0 4,217 + -1.4 4,217 + -0.4 4,217 + -0.3 4,218 - +0.0 4,218 - -0.5 4,218 - -0.2 4,218 - +0.1 4,223 + +0.6 4,223 + -0.4 4,223 + +1.5 4,223 + -0.7 4,224 - -0.2 4,224 - +0.1 4,224 - -0.1 4,224 - +0.1 4,258 + -0.6 4,258 + -0.6 4,258 + -1.1 4,258 + -2.1 4,258 + +0.3 4,258 + -0.2 4,258 + +0.0 4,258 + +0.4 4,258 + +0.1 4,259 - +0.1 4,259 - -0.8 4,259 - +0.8 4,259 - +0.1 4,259 - -0.4 4,259 - +0.2 4,259 - -0.5 4,259 - -0.1 4,259 - -0.1 4,269 + -0.1 4,269 + -1.0 4,269 + +0.8 4,270 - -1.2 4,270 - -0.2 4,270 - -0.3 4,270 - +1.6 4,464 + -0.9 4,464 + -1.3 4,464 + -0.4 4,464 + -0.4 4,464 + +0.0 4,464 + +0.2 4,476 - -1.0 4,476 - +0.3 4,476 - -1.6 4,476 - -0.7 4,476 - -2.6 4,486 + +0.4 4,486 + -0.1 4,486 + +0.9 4,486 + -0.6 4,486 + +0.4 4,487 - -1.1 4,487 - -0.9 4,487 - -0.2 4,487 - -0.2 4,497 + -1.9 4,498 - -1.1 4,508 + -1.9 4,508 + -1.2 4,508 + +0.5 4,508 + -1.4 4,508 + +2.4 4,509 - -0.2 4,509 - +0.2 4,509 - -1.3 4,509 - -0.8 4,509 - -2.9 4,535 + -0.3 4,535 + -0.4 4,536 - -0.6 4,536 - -0.4 4,739 - GFF4374 0.13 -0.8 4,809 + GFF4374 0.26 +0.0 4,836 - GFF4374 0.32 +1.9 4,843 + GFF4374 0.33 -0.4 4,843 + GFF4374 0.33 +1.4 4,843 + GFF4374 0.33 +0.3 4,843 + GFF4374 0.33 +0.0 4,925 - GFF4374 0.49 -0.3 4,967 - GFF4374 0.57 +3.9 4,967 - GFF4374 0.57 -0.6 4,967 - GFF4374 0.57 -1.1 5,224 - -0.0 5,265 + -0.4 5,265 + -0.1 5,265 + -1.6 5,265 + -0.1 5,265 + -0.4 5,265 + +0.1 5,266 - -0.8 5,266 - -0.4 5,266 - -1.8 5,266 - -0.8 5,279 + -0.7 5,279 + -0.1 5,280 - -0.1 5,280 - -0.6 5,367 + GFF4375 0.18 +0.9 5,367 + GFF4375 0.18 -0.1 5,367 + GFF4375 0.18 -1.1 5,367 + GFF4375 0.18 -0.3 5,367 + GFF4375 0.18 -1.2 5,367 + GFF4375 0.18 -0.3 5,367 + GFF4375 0.18 +0.5 5,368 - GFF4375 0.18 +0.9 5,368 - GFF4375 0.18 +0.3 5,368 - GFF4375 0.18 -0.3 5,368 - GFF4375 0.18 -1.2 5,538 + GFF4375 0.40 -0.9 5,538 + GFF4375 0.40 -0.3 5,538 + GFF4375 0.40 -0.1 5,538 + GFF4375 0.40 +0.4 5,538 + GFF4375 0.40 +0.5 5,538 + GFF4375 0.40 +0.2 5,538 + GFF4375 0.40 -0.1 5,539 - GFF4375 0.40 -0.9 5,539 - GFF4375 0.40 +1.1 5,539 - GFF4375 0.40 +0.6 5,582 + GFF4375 0.45 -0.6 5,582 + GFF4375 0.45 -0.9 5,582 + GFF4375 0.45 +0.0 5,582 + GFF4375 0.45 -0.1 5,582 + GFF4375 0.45 -0.4 5,582 + GFF4375 0.45 -1.8 5,582 + GFF4375 0.45 +0.5 5,583 - GFF4375 0.46 -0.0 5,583 - GFF4375 0.46 +0.4 5,583 - GFF4375 0.46 -0.6 5,583 - GFF4375 0.46 -0.7 5,583 - GFF4375 0.46 -1.5 5,583 - GFF4375 0.46 -0.5 5,583 - GFF4375 0.46 -0.1 5,583 - GFF4375 0.46 -0.2 5,583 - GFF4375 0.46 -1.9 5,583 - GFF4375 0.46 +0.1 5,583 - GFF4375 0.46 -0.6 5,583 - GFF4375 0.46 +0.1 5,586 + GFF4375 0.46 +2.3 5,586 + GFF4375 0.46 +0.4 5,586 + GFF4375 0.46 +0.4 5,586 + GFF4375 0.46 -0.5 5,586 + GFF4375 0.46 -0.6 5,586 + GFF4375 0.46 -0.4 5,586 + GFF4375 0.46 +0.4 5,586 + GFF4375 0.46 +0.2 5,586 + GFF4375 0.46 +0.4 5,587 - GFF4375 0.46 +0.1 5,587 - GFF4375 0.46 -0.3 5,587 - GFF4375 0.46 -0.3 5,587 - GFF4375 0.46 -0.2 5,587 - GFF4375 0.46 +0.3 5,587 - GFF4375 0.46 +0.3 5,587 - GFF4375 0.46 -1.4 5,601 + GFF4375 0.48 -0.5 5,601 + GFF4375 0.48 +0.6 5,601 + GFF4375 0.48 -0.2 5,601 + GFF4375 0.48 -1.0 5,601 + GFF4375 0.48 +0.3 5,601 + GFF4375 0.48 +0.6 5,601 + GFF4375 0.48 +0.5 5,602 + GFF4375 0.48 +1.1 5,602 - GFF4375 0.48 +0.1 5,602 - GFF4375 0.48 -0.2 5,602 - GFF4375 0.48 -0.8 5,602 - GFF4375 0.48 -0.6 5,602 - GFF4375 0.48 -0.2 5,602 - GFF4375 0.48 -0.8 5,602 - GFF4375 0.48 -0.4 5,602 - GFF4375 0.48 -0.1 5,602 - GFF4375 0.48 +0.9 5,602 - GFF4375 0.48 -0.4 5,602 - GFF4375 0.48 +0.9 5,643 + GFF4375 0.53 -0.2 5,643 + GFF4375 0.53 -0.1 5,644 - GFF4375 0.53 +0.1 5,758 + GFF4375 0.68 +0.6 5,759 - GFF4375 0.68 -0.3 5,880 + GFF4375 0.83 -1.2 5,880 + GFF4375 0.83 +0.9 5,881 - GFF4375 0.83 -0.3 5,881 - GFF4375 0.83 +1.1 5,881 - GFF4375 0.83 -0.1 5,964 + +0.0 5,964 + -0.7 5,965 - +0.8 5,965 - -0.9 5,965 - -0.8 6,050 + -0.2 6,050 + -0.0 6,051 - -0.4 6,066 + -0.0 6,066 + -0.3 6,066 + -1.8 6,066 + +1.2 6,066 + -0.6 6,066 + -0.1 6,067 - +0.7 6,067 - +0.5 6,125 + -0.6
Or see this region's nucleotide sequence