Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF434 and GFF435 are separated by 25 nucleotides GFF435 and GFF436 are separated by 46 nucleotides GFF436 and GFF437 are separated by 193 nucleotides GFF437 and GFF438 overlap by 40 nucleotides
GFF434 - OsmC/Ohr family protein, at 472,775 to 473,239
GFF434
GFF435 - hypothetical protein, at 473,265 to 473,816
GFF435
GFF436 - LrgA-associated membrane protein LrgB, at 473,863 to 474,594
GFF436
GFF437 - Antiholin-like protein LrgA, at 474,788 to 475,210
GFF437
GFF438 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 475,171 to 476,187
GFF438
Position (kb) 473
474
475 Strain fitness (log2 ratio) -2
-1
0
1
2 at 472.980 kb on + strand, within GFF434 at 472.980 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.175 kb on + strand, within GFF434 at 473.176 kb on - strand, within GFF434 at 473.176 kb on - strand, within GFF434 at 473.176 kb on - strand, within GFF434 at 473.176 kb on - strand, within GFF434 at 473.176 kb on - strand, within GFF434 at 473.229 kb on + strand at 473.229 kb on + strand at 473.230 kb on - strand at 473.230 kb on - strand at 473.230 kb on - strand at 473.230 kb on - strand at 473.257 kb on - strand at 473.264 kb on - strand at 473.272 kb on + strand at 473.272 kb on + strand at 473.272 kb on + strand at 473.272 kb on + strand at 473.273 kb on - strand at 473.273 kb on - strand at 473.273 kb on - strand at 473.273 kb on - strand at 473.273 kb on - strand at 473.273 kb on - strand at 473.273 kb on - strand at 473.273 kb on - strand at 473.461 kb on + strand, within GFF435 at 473.494 kb on + strand, within GFF435 at 473.494 kb on + strand, within GFF435 at 473.495 kb on - strand, within GFF435 at 473.515 kb on + strand, within GFF435 at 473.515 kb on + strand, within GFF435 at 473.515 kb on + strand, within GFF435 at 473.516 kb on - strand, within GFF435 at 473.516 kb on - strand, within GFF435 at 473.596 kb on + strand, within GFF435 at 473.597 kb on - strand, within GFF435 at 473.597 kb on - strand, within GFF435 at 473.776 kb on + strand at 473.776 kb on + strand at 473.776 kb on + strand at 473.776 kb on + strand at 473.776 kb on + strand at 473.776 kb on + strand at 473.776 kb on + strand at 473.776 kb on + strand at 473.777 kb on - strand at 473.777 kb on - strand at 473.777 kb on - strand at 473.777 kb on - strand at 473.777 kb on - strand at 473.777 kb on - strand at 473.788 kb on + strand at 473.789 kb on - strand at 473.789 kb on - strand at 473.789 kb on - strand at 473.789 kb on - strand at 473.789 kb on - strand at 474.317 kb on + strand, within GFF436 at 474.386 kb on + strand, within GFF436 at 474.386 kb on + strand, within GFF436 at 474.386 kb on + strand, within GFF436 at 474.387 kb on - strand, within GFF436 at 474.387 kb on - strand, within GFF436 at 474.506 kb on + strand, within GFF436 at 474.507 kb on - strand, within GFF436 at 474.507 kb on - strand, within GFF436 at 475.134 kb on + strand, within GFF437 at 475.134 kb on + strand, within GFF437 at 475.134 kb on + strand, within GFF437 at 475.135 kb on - strand, within GFF437 at 475.135 kb on - strand, within GFF437 at 475.135 kb on - strand, within GFF437 at 475.337 kb on + strand, within GFF438 at 475.337 kb on + strand, within GFF438 at 475.338 kb on - strand, within GFF438
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 472,980 + GFF434 0.44 -0.4 472,980 + GFF434 0.44 +1.0 473,175 + GFF434 0.86 +0.4 473,175 + GFF434 0.86 +0.8 473,175 + GFF434 0.86 -0.5 473,175 + GFF434 0.86 -0.9 473,175 + GFF434 0.86 -0.3 473,175 + GFF434 0.86 -0.2 473,175 + GFF434 0.86 +0.1 473,175 + GFF434 0.86 -0.0 473,175 + GFF434 0.86 -1.1 473,175 + GFF434 0.86 +0.5 473,175 + GFF434 0.86 -0.2 473,176 - GFF434 0.86 -1.3 473,176 - GFF434 0.86 -1.3 473,176 - GFF434 0.86 -1.0 473,176 - GFF434 0.86 +0.3 473,176 - GFF434 0.86 +1.0 473,229 + -0.5 473,229 + -0.3 473,230 - -0.3 473,230 - -0.3 473,230 - +0.5 473,230 - -0.5 473,257 - -0.4 473,264 - -0.3 473,272 + -1.3 473,272 + -0.3 473,272 + +0.8 473,272 + -1.7 473,273 - +1.2 473,273 - +0.5 473,273 - +0.2 473,273 - +0.8 473,273 - -0.6 473,273 - +0.4 473,273 - -0.0 473,273 - +0.3 473,461 + GFF435 0.36 -0.3 473,494 + GFF435 0.41 -1.3 473,494 + GFF435 0.41 +0.2 473,495 - GFF435 0.42 +0.1 473,515 + GFF435 0.45 -0.6 473,515 + GFF435 0.45 +0.1 473,515 + GFF435 0.45 -0.8 473,516 - GFF435 0.45 -0.8 473,516 - GFF435 0.45 +0.5 473,596 + GFF435 0.60 -0.3 473,597 - GFF435 0.60 -0.1 473,597 - GFF435 0.60 -1.3 473,776 + -0.2 473,776 + -1.3 473,776 + -0.3 473,776 + -0.0 473,776 + -0.1 473,776 + -0.3 473,776 + +0.2 473,776 + -0.8 473,777 - +2.0 473,777 - +1.0 473,777 - +1.0 473,777 - -0.1 473,777 - -0.0 473,777 - -0.0 473,788 + -0.2 473,789 - -0.6 473,789 - -0.5 473,789 - +0.4 473,789 - +0.4 473,789 - +1.5 474,317 + GFF436 0.62 +0.4 474,386 + GFF436 0.71 -0.4 474,386 + GFF436 0.71 +0.9 474,386 + GFF436 0.71 +0.1 474,387 - GFF436 0.72 +0.3 474,387 - GFF436 0.72 -1.2 474,506 + GFF436 0.88 -0.2 474,507 - GFF436 0.88 +0.6 474,507 - GFF436 0.88 +1.2 475,134 + GFF437 0.82 +0.5 475,134 + GFF437 0.82 +1.1 475,134 + GFF437 0.82 -0.2 475,135 - GFF437 0.82 -0.3 475,135 - GFF437 0.82 -2.1 475,135 - GFF437 0.82 -0.4 475,337 + GFF438 0.16 -0.6 475,337 + GFF438 0.16 +0.5 475,338 - GFF438 0.16 -1.1
Or see this region's nucleotide sequence