Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4316 and GFF4317 are separated by 4 nucleotides GFF4317 and GFF4318 are separated by 21 nucleotides GFF4318 and GFF4319 are separated by 25 nucleotides GFF4319 and GFF4320 are separated by 187 nucleotides
GFF4316 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 236,525 to 238,327
GFF4316
GFF4317 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 238,332 to 239,210
GFF4317
GFF4318 - no description, at 239,232 to 240,428
GFF4318
GFF4319 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 240,454 to 241,215
GFF4319
GFF4320 - Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 241,403 to 242,620
GFF4320
Position (kb) 239
240
241 Strain fitness (log2 ratio) -1
0
1
2 at 238.333 kb on + strand at 238.786 kb on + strand, within GFF4317 at 239.164 kb on + strand at 239.453 kb on - strand, within GFF4318 at 239.459 kb on - strand, within GFF4318 at 239.459 kb on - strand, within GFF4318 at 239.579 kb on + strand, within GFF4318 at 239.593 kb on + strand, within GFF4318 at 239.779 kb on + strand, within GFF4318 at 239.779 kb on + strand, within GFF4318 at 239.810 kb on - strand, within GFF4318 at 239.977 kb on + strand, within GFF4318 at 239.977 kb on + strand, within GFF4318 at 240.001 kb on + strand, within GFF4318 at 240.265 kb on + strand, within GFF4318 at 240.266 kb on - strand, within GFF4318 at 240.459 kb on - strand at 240.747 kb on - strand, within GFF4319 at 241.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 238,333 + +0.3 238,786 + GFF4317 0.52 -0.2 239,164 + +2.3 239,453 - GFF4318 0.18 +1.5 239,459 - GFF4318 0.19 -0.4 239,459 - GFF4318 0.19 -0.2 239,579 + GFF4318 0.29 +0.7 239,593 + GFF4318 0.30 -0.2 239,779 + GFF4318 0.46 +0.1 239,779 + GFF4318 0.46 +0.0 239,810 - GFF4318 0.48 +0.1 239,977 + GFF4318 0.62 +0.6 239,977 + GFF4318 0.62 +0.9 240,001 + GFF4318 0.64 +0.2 240,265 + GFF4318 0.86 -0.0 240,266 - GFF4318 0.86 -0.3 240,459 - -0.1 240,747 - GFF4319 0.38 -0.7 241,348 + -0.3
Or see this region's nucleotide sequence