Strain Fitness in Variovorax sp. SCN45 around GFF427

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF426 and GFF427 are separated by 122 nucleotidesGFF427 and GFF428 are separated by 77 nucleotides GFF426 - Cobyric acid synthase (EC 6.3.5.10), at 461,656 to 463,146 GFF426 GFF427 - no description, at 463,269 to 463,499 GFF427 GFF428 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 463,577 to 465,073 GFF428 Position (kb) 463 464Strain fitness (log2 ratio) -2 -1 0 1at 462.324 kb on - strand, within GFF426at 462.569 kb on + strand, within GFF426at 462.569 kb on + strand, within GFF426at 462.569 kb on + strand, within GFF426at 462.570 kb on - strand, within GFF426at 462.570 kb on - strand, within GFF426at 462.917 kb on + strand, within GFF426at 462.917 kb on + strand, within GFF426at 462.917 kb on + strand, within GFF426at 462.918 kb on - strand, within GFF426at 462.918 kb on - strand, within GFF426at 462.918 kb on - strand, within GFF426at 462.918 kb on - strand, within GFF426at 463.013 kb on + strandat 463.231 kb on + strandat 463.231 kb on + strandat 463.231 kb on + strandat 463.231 kb on + strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.295 kb on - strand, within GFF427at 463.295 kb on - strand, within GFF427at 463.381 kb on - strand, within GFF427at 463.389 kb on + strand, within GFF427at 463.389 kb on + strand, within GFF427at 463.389 kb on + strand, within GFF427at 463.389 kb on + strand, within GFF427at 463.390 kb on - strand, within GFF427at 463.390 kb on - strand, within GFF427at 463.419 kb on + strand, within GFF427at 463.419 kb on + strand, within GFF427at 463.419 kb on + strand, within GFF427at 463.420 kb on - strand, within GFF427at 463.420 kb on - strand, within GFF427at 463.420 kb on - strand, within GFF427at 463.680 kb on + strandat 463.680 kb on + strandat 463.680 kb on + strandat 463.680 kb on + strandat 463.680 kb on + strandat 463.681 kb on - strandat 463.681 kb on - strandat 463.681 kb on - strandat 463.681 kb on - strandat 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.765 kb on - strand, within GFF428at 463.765 kb on - strand, within GFF428at 463.914 kb on + strand, within GFF428at 463.914 kb on + strand, within GFF428at 463.915 kb on - strand, within GFF428at 463.915 kb on - strand, within GFF428at 464.064 kb on + strand, within GFF428at 464.430 kb on + strand, within GFF428at 464.430 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.491 kb on - strand, within GFF428at 464.491 kb on - strand, within GFF428at 464.491 kb on - strand, within GFF428at 464.491 kb on - strand, within GFF428

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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462,324 - GFF426 0.45 +0.5
462,569 + GFF426 0.61 +0.2
462,569 + GFF426 0.61 +0.2
462,569 + GFF426 0.61 -0.6
462,570 - GFF426 0.61 +0.1
462,570 - GFF426 0.61 +0.6
462,917 + GFF426 0.85 +0.2
462,917 + GFF426 0.85 -1.7
462,917 + GFF426 0.85 -0.8
462,918 - GFF426 0.85 -0.0
462,918 - GFF426 0.85 -1.0
462,918 - GFF426 0.85 -1.8
462,918 - GFF426 0.85 +0.1
463,013 + +0.1
463,231 + -1.3
463,231 + +0.2
463,231 + +0.4
463,231 + -0.0
463,232 - -1.7
463,232 - +0.3
463,232 - +0.1
463,232 - +1.0
463,232 - +0.2
463,232 - -0.3
463,294 + GFF427 0.11 -0.3
463,294 + GFF427 0.11 -0.0
463,294 + GFF427 0.11 -0.3
463,294 + GFF427 0.11 -1.0
463,294 + GFF427 0.11 -2.5
463,294 + GFF427 0.11 -0.2
463,294 + GFF427 0.11 -0.8
463,295 - GFF427 0.11 +1.0
463,295 - GFF427 0.11 -1.6
463,381 - GFF427 0.48 +0.2
463,389 + GFF427 0.52 -0.6
463,389 + GFF427 0.52 +0.4
463,389 + GFF427 0.52 +0.4
463,389 + GFF427 0.52 -0.0
463,390 - GFF427 0.52 -0.7
463,390 - GFF427 0.52 -0.4
463,419 + GFF427 0.65 +0.4
463,419 + GFF427 0.65 -0.5
463,419 + GFF427 0.65 -0.5
463,420 - GFF427 0.65 -0.6
463,420 - GFF427 0.65 +0.1
463,420 - GFF427 0.65 -0.1
463,680 + -1.5
463,680 + -1.9
463,680 + -0.1
463,680 + -0.2
463,680 + +0.9
463,681 - -0.8
463,681 - -0.8
463,681 - -0.0
463,681 - -0.7
463,764 + GFF428 0.12 -1.0
463,764 + GFF428 0.12 -0.7
463,764 + GFF428 0.12 -0.3
463,764 + GFF428 0.12 -1.1
463,764 + GFF428 0.12 -0.5
463,764 + GFF428 0.12 -0.2
463,765 - GFF428 0.13 -1.3
463,765 - GFF428 0.13 -0.8
463,914 + GFF428 0.23 +0.5
463,914 + GFF428 0.23 -0.1
463,915 - GFF428 0.23 -0.4
463,915 - GFF428 0.23 +0.2
464,064 + GFF428 0.33 +0.2
464,430 + GFF428 0.57 -0.0
464,430 + GFF428 0.57 +0.6
464,490 + GFF428 0.61 +1.3
464,490 + GFF428 0.61 -0.8
464,490 + GFF428 0.61 -0.3
464,490 + GFF428 0.61 +0.1
464,490 + GFF428 0.61 -1.0
464,490 + GFF428 0.61 -0.8
464,491 - GFF428 0.61 +0.4
464,491 - GFF428 0.61 -0.2
464,491 - GFF428 0.61 +1.2
464,491 - GFF428 0.61 +0.2

Or see this region's nucleotide sequence