Strain Fitness in Variovorax sp. SCN45 around GFF4249

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4248 and GFF4249 are separated by 102 nucleotidesGFF4249 and GFF4250 are separated by 59 nucleotidesGFF4250 and GFF4251 are separated by 102 nucleotides GFF4248 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 163,087 to 163,992 GFF4248 GFF4249 - hypothetical protein, at 164,095 to 165,507 GFF4249 GFF4250 - Transcriptional regulator, AcrR family, at 165,567 to 166,118 GFF4250 GFF4251 - no description, at 166,221 to 166,895 GFF4251 Position (kb) 164 165 166Strain fitness (log2 ratio) -2 -1 0 1 2at 163.100 kb on + strandat 163.101 kb on - strandat 163.231 kb on + strand, within GFF4248at 163.231 kb on + strand, within GFF4248at 163.231 kb on + strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.636 kb on + strand, within GFF4248at 163.636 kb on + strand, within GFF4248at 163.636 kb on + strand, within GFF4248at 163.636 kb on + strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.639 kb on + strand, within GFF4248at 163.675 kb on + strand, within GFF4248at 163.676 kb on - strand, within GFF4248at 163.676 kb on - strand, within GFF4248at 163.676 kb on - strand, within GFF4248at 163.750 kb on + strand, within GFF4248at 163.750 kb on + strand, within GFF4248at 163.834 kb on + strand, within GFF4248at 163.834 kb on + strand, within GFF4248at 163.835 kb on - strand, within GFF4248at 163.835 kb on - strand, within GFF4248at 163.835 kb on - strand, within GFF4248at 164.022 kb on + strandat 164.022 kb on + strandat 164.061 kb on - strandat 164.061 kb on - strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.112 kb on + strandat 164.112 kb on + strandat 164.113 kb on - strandat 164.113 kb on - strandat 164.113 kb on - strandat 164.113 kb on - strandat 164.113 kb on - strandat 164.393 kb on - strand, within GFF4249at 164.417 kb on + strand, within GFF4249at 164.489 kb on + strand, within GFF4249at 164.489 kb on + strand, within GFF4249at 164.489 kb on + strand, within GFF4249at 164.490 kb on - strand, within GFF4249at 164.490 kb on - strand, within GFF4249at 164.490 kb on - strand, within GFF4249at 164.560 kb on + strand, within GFF4249at 164.560 kb on + strand, within GFF4249at 164.561 kb on - strand, within GFF4249at 164.561 kb on - strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.813 kb on - strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.954 kb on - strand, within GFF4249at 164.976 kb on + strand, within GFF4249at 165.003 kb on + strand, within GFF4249at 165.003 kb on + strand, within GFF4249at 165.003 kb on + strand, within GFF4249at 165.004 kb on - strand, within GFF4249at 165.004 kb on - strand, within GFF4249at 165.091 kb on + strand, within GFF4249at 165.091 kb on + strand, within GFF4249at 165.092 kb on - strand, within GFF4249at 165.092 kb on - strand, within GFF4249at 165.092 kb on - strand, within GFF4249at 165.127 kb on + strand, within GFF4249at 165.128 kb on - strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.237 kb on + strand, within GFF4249at 165.237 kb on + strand, within GFF4249at 165.238 kb on - strand, within GFF4249at 165.248 kb on - strand, within GFF4249at 165.330 kb on + strand, within GFF4249at 165.330 kb on + strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.382 kb on + strandat 165.382 kb on + strandat 165.382 kb on + strandat 165.383 kb on - strandat 165.383 kb on - strandat 165.383 kb on - strandat 165.419 kb on - strandat 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 166.238 kb on + strandat 166.238 kb on + strandat 166.238 kb on + strandat 166.239 kb on - strandat 166.239 kb on - strandat 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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163,100 + -0.6
163,101 - -0.3
163,231 + GFF4248 0.16 -0.9
163,231 + GFF4248 0.16 -0.3
163,231 + GFF4248 0.16 +0.3
163,232 - GFF4248 0.16 +0.4
163,232 - GFF4248 0.16 -2.5
163,232 - GFF4248 0.16 -0.9
163,232 - GFF4248 0.16 -0.2
163,232 - GFF4248 0.16 +0.1
163,636 + GFF4248 0.61 -1.1
163,636 + GFF4248 0.61 -0.6
163,636 + GFF4248 0.61 -0.1
163,636 + GFF4248 0.61 +0.1
163,637 - GFF4248 0.61 -0.3
163,637 - GFF4248 0.61 +0.1
163,637 - GFF4248 0.61 +0.8
163,637 - GFF4248 0.61 -0.1
163,637 - GFF4248 0.61 -0.8
163,637 - GFF4248 0.61 +0.4
163,637 - GFF4248 0.61 -0.5
163,637 - GFF4248 0.61 +0.5
163,639 + GFF4248 0.61 +0.9
163,675 + GFF4248 0.65 -0.1
163,676 - GFF4248 0.65 -0.8
163,676 - GFF4248 0.65 -0.4
163,676 - GFF4248 0.65 +0.8
163,750 + GFF4248 0.73 -0.7
163,750 + GFF4248 0.73 +1.5
163,834 + GFF4248 0.82 -0.4
163,834 + GFF4248 0.82 -0.6
163,835 - GFF4248 0.83 +0.0
163,835 - GFF4248 0.83 -1.5
163,835 - GFF4248 0.83 -1.2
164,022 + -0.7
164,022 + +0.1
164,061 - -0.5
164,061 - -0.9
164,092 + -0.4
164,092 + -0.5
164,092 + -0.5
164,092 + -0.6
164,092 + -0.3
164,092 + -0.3
164,092 + -0.4
164,092 + +0.3
164,092 + -1.1
164,092 + -0.3
164,092 + -0.2
164,092 + -0.5
164,092 + -0.1
164,092 + +0.5
164,092 + -0.8
164,093 - -0.5
164,093 - -0.6
164,093 - +0.9
164,093 - +0.1
164,093 - +0.1
164,093 - +0.2
164,093 - +0.2
164,093 - +0.1
164,093 - -0.8
164,093 - -0.6
164,093 - -0.3
164,093 - -0.9
164,093 - +0.2
164,093 - -0.7
164,093 - -0.5
164,112 + +0.3
164,112 + -0.6
164,113 - -0.7
164,113 - -1.1
164,113 - -0.5
164,113 - -0.5
164,113 - -0.2
164,393 - GFF4249 0.21 +0.5
164,417 + GFF4249 0.23 -0.3
164,489 + GFF4249 0.28 -0.5
164,489 + GFF4249 0.28 -0.8
164,489 + GFF4249 0.28 +0.2
164,490 - GFF4249 0.28 +0.6
164,490 - GFF4249 0.28 +0.1
164,490 - GFF4249 0.28 -0.7
164,560 + GFF4249 0.33 -0.7
164,560 + GFF4249 0.33 +0.2
164,561 - GFF4249 0.33 -0.1
164,561 - GFF4249 0.33 -0.3
164,668 + GFF4249 0.41 -0.5
164,668 + GFF4249 0.41 +0.0
164,668 + GFF4249 0.41 -1.5
164,668 + GFF4249 0.41 -0.3
164,669 - GFF4249 0.41 -0.2
164,669 - GFF4249 0.41 +0.5
164,669 - GFF4249 0.41 -0.2
164,813 - GFF4249 0.51 -0.1
164,851 + GFF4249 0.54 +0.5
164,851 + GFF4249 0.54 -0.4
164,851 + GFF4249 0.54 +0.2
164,851 + GFF4249 0.54 -0.1
164,852 - GFF4249 0.54 -0.1
164,852 - GFF4249 0.54 -0.5
164,852 - GFF4249 0.54 -1.2
164,852 - GFF4249 0.54 -1.8
164,954 - GFF4249 0.61 +0.2
164,976 + GFF4249 0.62 -0.3
165,003 + GFF4249 0.64 +1.2
165,003 + GFF4249 0.64 -0.7
165,003 + GFF4249 0.64 -1.0
165,004 - GFF4249 0.64 -1.1
165,004 - GFF4249 0.64 -0.5
165,091 + GFF4249 0.70 -0.7
165,091 + GFF4249 0.70 -0.1
165,092 - GFF4249 0.71 -0.7
165,092 - GFF4249 0.71 +0.0
165,092 - GFF4249 0.71 -0.7
165,127 + GFF4249 0.73 -0.6
165,128 - GFF4249 0.73 -1.1
165,235 + GFF4249 0.81 -0.1
165,235 + GFF4249 0.81 -0.2
165,235 + GFF4249 0.81 +1.5
165,235 + GFF4249 0.81 -1.3
165,237 + GFF4249 0.81 +0.5
165,237 + GFF4249 0.81 +0.2
165,238 - GFF4249 0.81 +0.2
165,248 - GFF4249 0.82 -1.0
165,330 + GFF4249 0.87 +0.2
165,330 + GFF4249 0.87 +0.0
165,331 - GFF4249 0.87 -0.9
165,331 - GFF4249 0.87 +1.9
165,331 - GFF4249 0.87 -1.2
165,331 - GFF4249 0.87 -0.8
165,382 + -0.2
165,382 + +0.7
165,382 + +0.2
165,383 - -1.0
165,383 - -1.0
165,383 - +0.0
165,419 - -0.8
165,994 + GFF4250 0.77 -0.1
165,994 + GFF4250 0.77 -0.3
165,994 + GFF4250 0.77 +1.0
165,994 + GFF4250 0.77 -0.2
165,994 + GFF4250 0.77 +0.6
165,994 + GFF4250 0.77 -0.5
165,995 - GFF4250 0.78 +0.3
165,995 - GFF4250 0.78 -1.9
165,995 - GFF4250 0.78 -1.3
166,238 + -0.9
166,238 + -0.1
166,238 + +1.4
166,239 - -0.6
166,239 - -0.1
166,437 + GFF4251 0.32 +0.3
166,437 + GFF4251 0.32 -0.4
166,437 + GFF4251 0.32 -1.2
166,437 + GFF4251 0.32 -0.2
166,438 - GFF4251 0.32 -0.2
166,438 - GFF4251 0.32 -1.2
166,438 - GFF4251 0.32 +0.3
166,438 - GFF4251 0.32 +0.4
166,438 - GFF4251 0.32 -0.1
166,438 - GFF4251 0.32 -1.9
166,438 - GFF4251 0.32 +0.4

Or see this region's nucleotide sequence