Strain Fitness in Variovorax sp. SCN45 around GFF4245

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4244 and GFF4245 are separated by 130 nucleotidesGFF4245 and GFF4246 are separated by 18 nucleotidesGFF4246 and GFF4247 are separated by 41 nucleotides GFF4244 - Acid phosphatase (EC 3.1.3.2), at 157,746 to 160,196 GFF4244 GFF4245 - Cytochrome c peroxidase (EC 1.11.1.5), at 160,327 to 161,706 GFF4245 GFF4246 - FIG00464377: hypothetical protein, at 161,725 to 162,369 GFF4246 GFF4247 - no description, at 162,411 to 163,082 GFF4247 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1 2at 159.336 kb on + strand, within GFF4244at 159.336 kb on + strand, within GFF4244at 159.337 kb on - strand, within GFF4244at 159.337 kb on - strand, within GFF4244at 159.393 kb on + strand, within GFF4244at 159.393 kb on + strand, within GFF4244at 159.394 kb on - strand, within GFF4244at 159.394 kb on - strand, within GFF4244at 159.394 kb on - strand, within GFF4244at 159.394 kb on - strand, within GFF4244at 159.394 kb on - strand, within GFF4244at 159.549 kb on + strand, within GFF4244at 159.549 kb on + strand, within GFF4244at 159.549 kb on + strand, within GFF4244at 159.549 kb on + strand, within GFF4244at 159.550 kb on - strand, within GFF4244at 159.550 kb on - strand, within GFF4244at 159.550 kb on - strand, within GFF4244at 159.550 kb on - strand, within GFF4244at 159.550 kb on - strand, within GFF4244at 159.550 kb on - strand, within GFF4244at 159.630 kb on + strand, within GFF4244at 159.630 kb on + strand, within GFF4244at 159.631 kb on - strand, within GFF4244at 159.631 kb on - strand, within GFF4244at 159.759 kb on + strand, within GFF4244at 159.759 kb on + strand, within GFF4244at 159.759 kb on + strand, within GFF4244at 159.759 kb on + strand, within GFF4244at 159.759 kb on + strand, within GFF4244at 159.759 kb on + strand, within GFF4244at 159.759 kb on + strand, within GFF4244at 159.760 kb on - strand, within GFF4244at 159.760 kb on - strand, within GFF4244at 159.760 kb on - strand, within GFF4244at 159.760 kb on - strand, within GFF4244at 159.861 kb on + strand, within GFF4244at 159.862 kb on - strand, within GFF4244at 159.933 kb on + strand, within GFF4244at 159.951 kb on + strand, within GFF4244at 159.951 kb on + strand, within GFF4244at 159.952 kb on - strandat 159.952 kb on - strandat 160.050 kb on + strandat 160.050 kb on + strandat 160.050 kb on + strandat 160.050 kb on + strandat 160.051 kb on - strandat 160.051 kb on - strandat 160.068 kb on + strandat 160.084 kb on - strandat 160.194 kb on + strandat 160.195 kb on - strandat 160.195 kb on - strandat 160.519 kb on + strand, within GFF4245at 160.519 kb on + strand, within GFF4245at 160.519 kb on + strand, within GFF4245at 160.520 kb on - strand, within GFF4245at 160.526 kb on - strand, within GFF4245at 160.804 kb on + strand, within GFF4245at 160.805 kb on - strand, within GFF4245at 160.924 kb on + strand, within GFF4245at 160.924 kb on + strand, within GFF4245at 160.925 kb on - strand, within GFF4245at 160.936 kb on + strand, within GFF4245at 160.936 kb on + strand, within GFF4245at 160.936 kb on + strand, within GFF4245at 160.936 kb on + strand, within GFF4245at 160.936 kb on + strand, within GFF4245at 160.937 kb on - strand, within GFF4245at 160.937 kb on - strand, within GFF4245at 160.937 kb on - strand, within GFF4245at 160.937 kb on - strand, within GFF4245at 160.937 kb on - strand, within GFF4245at 160.945 kb on + strand, within GFF4245at 160.945 kb on + strand, within GFF4245at 160.945 kb on + strand, within GFF4245at 160.945 kb on + strand, within GFF4245at 160.945 kb on + strand, within GFF4245at 160.945 kb on + strand, within GFF4245at 160.946 kb on - strand, within GFF4245at 160.946 kb on - strand, within GFF4245at 160.946 kb on - strand, within GFF4245at 160.946 kb on - strand, within GFF4245at 161.045 kb on - strand, within GFF4245at 161.095 kb on + strand, within GFF4245at 161.095 kb on + strand, within GFF4245at 161.096 kb on - strand, within GFF4245at 161.096 kb on - strand, within GFF4245at 161.096 kb on - strand, within GFF4245at 161.217 kb on + strand, within GFF4245at 161.217 kb on + strand, within GFF4245at 161.217 kb on + strand, within GFF4245at 161.217 kb on + strand, within GFF4245at 161.217 kb on + strand, within GFF4245at 161.218 kb on - strand, within GFF4245at 161.218 kb on - strand, within GFF4245at 161.218 kb on - strand, within GFF4245at 161.218 kb on - strand, within GFF4245at 161.218 kb on - strand, within GFF4245at 161.248 kb on + strand, within GFF4245at 161.249 kb on - strand, within GFF4245at 161.350 kb on + strand, within GFF4245at 161.351 kb on - strand, within GFF4245at 161.351 kb on - strand, within GFF4245at 161.351 kb on - strand, within GFF4245at 161.351 kb on - strand, within GFF4245at 161.383 kb on + strand, within GFF4245at 161.476 kb on + strand, within GFF4245at 161.476 kb on + strand, within GFF4245at 161.477 kb on - strand, within GFF4245at 161.477 kb on - strand, within GFF4245at 161.477 kb on - strand, within GFF4245at 161.659 kb on + strandat 161.660 kb on - strandat 161.870 kb on - strand, within GFF4246at 161.870 kb on - strand, within GFF4246at 161.870 kb on - strand, within GFF4246at 161.905 kb on + strand, within GFF4246at 161.905 kb on + strand, within GFF4246at 161.905 kb on + strand, within GFF4246at 161.905 kb on + strand, within GFF4246at 161.905 kb on + strand, within GFF4246at 161.906 kb on - strand, within GFF4246at 162.055 kb on + strand, within GFF4246at 162.055 kb on + strand, within GFF4246at 162.055 kb on + strand, within GFF4246at 162.055 kb on + strand, within GFF4246at 162.056 kb on - strand, within GFF4246at 162.058 kb on + strand, within GFF4246at 162.058 kb on + strand, within GFF4246at 162.058 kb on + strand, within GFF4246at 162.058 kb on + strand, within GFF4246at 162.058 kb on + strand, within GFF4246at 162.212 kb on - strand, within GFF4246

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
159,336 + GFF4244 0.65 +2.0
159,336 + GFF4244 0.65 -1.0
159,337 - GFF4244 0.65 +0.5
159,337 - GFF4244 0.65 +0.2
159,393 + GFF4244 0.67 -0.4
159,393 + GFF4244 0.67 -0.2
159,394 - GFF4244 0.67 +0.0
159,394 - GFF4244 0.67 -1.2
159,394 - GFF4244 0.67 -0.1
159,394 - GFF4244 0.67 -0.3
159,394 - GFF4244 0.67 +0.2
159,549 + GFF4244 0.74 -1.1
159,549 + GFF4244 0.74 -0.7
159,549 + GFF4244 0.74 -0.4
159,549 + GFF4244 0.74 -0.6
159,550 - GFF4244 0.74 -0.7
159,550 - GFF4244 0.74 -0.2
159,550 - GFF4244 0.74 -0.5
159,550 - GFF4244 0.74 -1.3
159,550 - GFF4244 0.74 -0.5
159,550 - GFF4244 0.74 -0.5
159,630 + GFF4244 0.77 -0.5
159,630 + GFF4244 0.77 -0.2
159,631 - GFF4244 0.77 +0.1
159,631 - GFF4244 0.77 +0.0
159,759 + GFF4244 0.82 -0.9
159,759 + GFF4244 0.82 -0.2
159,759 + GFF4244 0.82 -1.1
159,759 + GFF4244 0.82 -0.6
159,759 + GFF4244 0.82 +0.2
159,759 + GFF4244 0.82 -0.4
159,759 + GFF4244 0.82 -0.5
159,760 - GFF4244 0.82 -0.7
159,760 - GFF4244 0.82 -0.1
159,760 - GFF4244 0.82 -0.9
159,760 - GFF4244 0.82 -0.0
159,861 + GFF4244 0.86 -0.1
159,862 - GFF4244 0.86 -1.4
159,933 + GFF4244 0.89 -0.1
159,951 + GFF4244 0.90 +0.8
159,951 + GFF4244 0.90 -0.2
159,952 - -0.2
159,952 - +1.2
160,050 + -0.9
160,050 + -0.1
160,050 + -0.0
160,050 + -2.2
160,051 - -0.7
160,051 - -0.8
160,068 + -0.6
160,084 - -0.8
160,194 + -1.1
160,195 - -0.7
160,195 - -0.6
160,519 + GFF4245 0.14 -0.2
160,519 + GFF4245 0.14 -0.2
160,519 + GFF4245 0.14 -0.2
160,520 - GFF4245 0.14 +0.8
160,526 - GFF4245 0.14 -1.5
160,804 + GFF4245 0.35 -0.3
160,805 - GFF4245 0.35 +0.4
160,924 + GFF4245 0.43 +0.0
160,924 + GFF4245 0.43 -0.6
160,925 - GFF4245 0.43 -1.4
160,936 + GFF4245 0.44 -1.3
160,936 + GFF4245 0.44 -0.3
160,936 + GFF4245 0.44 -1.3
160,936 + GFF4245 0.44 -1.8
160,936 + GFF4245 0.44 -0.3
160,937 - GFF4245 0.44 +0.2
160,937 - GFF4245 0.44 -1.1
160,937 - GFF4245 0.44 -0.6
160,937 - GFF4245 0.44 -0.1
160,937 - GFF4245 0.44 +0.2
160,945 + GFF4245 0.45 -0.4
160,945 + GFF4245 0.45 -0.1
160,945 + GFF4245 0.45 -1.8
160,945 + GFF4245 0.45 -0.8
160,945 + GFF4245 0.45 -0.9
160,945 + GFF4245 0.45 -0.6
160,946 - GFF4245 0.45 -1.8
160,946 - GFF4245 0.45 -0.7
160,946 - GFF4245 0.45 -0.9
160,946 - GFF4245 0.45 +0.2
161,045 - GFF4245 0.52 +0.4
161,095 + GFF4245 0.56 -0.1
161,095 + GFF4245 0.56 -0.1
161,096 - GFF4245 0.56 +0.2
161,096 - GFF4245 0.56 -0.5
161,096 - GFF4245 0.56 -0.3
161,217 + GFF4245 0.64 -0.7
161,217 + GFF4245 0.64 +0.4
161,217 + GFF4245 0.64 -1.3
161,217 + GFF4245 0.64 +0.1
161,217 + GFF4245 0.64 -1.1
161,218 - GFF4245 0.65 -0.4
161,218 - GFF4245 0.65 -1.0
161,218 - GFF4245 0.65 -0.4
161,218 - GFF4245 0.65 -0.1
161,218 - GFF4245 0.65 -0.9
161,248 + GFF4245 0.67 -0.4
161,249 - GFF4245 0.67 +0.7
161,350 + GFF4245 0.74 +1.5
161,351 - GFF4245 0.74 -0.2
161,351 - GFF4245 0.74 -0.9
161,351 - GFF4245 0.74 +0.3
161,351 - GFF4245 0.74 -0.5
161,383 + GFF4245 0.77 -0.6
161,476 + GFF4245 0.83 +0.4
161,476 + GFF4245 0.83 -0.9
161,477 - GFF4245 0.83 +0.1
161,477 - GFF4245 0.83 -0.1
161,477 - GFF4245 0.83 +0.5
161,659 + -0.1
161,660 - -0.3
161,870 - GFF4246 0.22 -1.0
161,870 - GFF4246 0.22 +0.2
161,870 - GFF4246 0.22 -0.9
161,905 + GFF4246 0.28 -0.4
161,905 + GFF4246 0.28 +1.1
161,905 + GFF4246 0.28 -0.6
161,905 + GFF4246 0.28 -0.2
161,905 + GFF4246 0.28 -0.1
161,906 - GFF4246 0.28 +0.9
162,055 + GFF4246 0.51 +0.2
162,055 + GFF4246 0.51 -0.7
162,055 + GFF4246 0.51 -0.2
162,055 + GFF4246 0.51 -0.0
162,056 - GFF4246 0.51 +0.2
162,058 + GFF4246 0.52 +0.0
162,058 + GFF4246 0.52 +0.0
162,058 + GFF4246 0.52 +0.1
162,058 + GFF4246 0.52 -0.9
162,058 + GFF4246 0.52 +1.5
162,212 - GFF4246 0.76 -2.2

Or see this region's nucleotide sequence