Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF421 and GFF423 are separated by 31 nucleotides GFF423 and GFF424 overlap by 4 nucleotides GFF424 and GFF425 overlap by 4 nucleotides
GFF421 - hypothetical protein, at 456,444 to 459,227
GFF421
GFF423 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 459,259 to 459,822
GFF423
GFF424 - Cobalamin synthase (EC 2.7.8.26), at 459,819 to 460,613
GFF424
GFF425 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 460,610 to 461,659
GFF425
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.576 kb on - strand, within GFF423 at 459.764 kb on + strand, within GFF423 at 459.765 kb on - strand, within GFF423 at 459.765 kb on - strand, within GFF423 at 459.844 kb on + strand at 459.844 kb on + strand at 459.844 kb on + strand at 459.845 kb on - strand at 459.845 kb on - strand at 459.845 kb on - strand at 460.006 kb on - strand, within GFF424 at 460.006 kb on - strand, within GFF424 at 460.006 kb on - strand, within GFF424 at 460.102 kb on + strand, within GFF424 at 460.102 kb on + strand, within GFF424 at 460.102 kb on + strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 459,144 + +0.5 459,144 + +0.4 459,144 + -1.2 459,144 + +0.8 459,144 + -0.5 459,144 + +1.0 459,144 + -0.2 459,144 + -0.9 459,144 + -1.0 459,144 + -0.5 459,144 + -0.4 459,144 + -1.6 459,144 + +2.0 459,144 + -1.1 459,144 + -1.1 459,144 + +0.0 459,144 + +0.0 459,144 + -0.8 459,144 + +0.3 459,144 + +0.8 459,144 + +0.4 459,145 - -0.3 459,145 - -0.9 459,145 - +1.1 459,145 - -0.4 459,145 - -1.1 459,145 - -1.5 459,145 - -1.3 459,145 - +0.7 459,145 - +0.1 459,145 - -0.3 459,145 - -0.0 459,145 - +1.2 459,145 - +0.0 459,145 - -0.6 459,145 - -0.0 459,145 - -0.3 459,145 - -0.9 459,145 - +0.8 459,225 + -0.8 459,225 + +1.6 459,225 + +0.4 459,225 + +0.7 459,225 + -2.1 459,225 + +1.0 459,225 + -0.3 459,225 + +0.1 459,226 - -1.6 459,226 - -0.3 459,226 - -0.7 459,226 - -0.2 459,226 - -1.2 459,226 - -1.1 459,226 - +0.7 459,576 - GFF423 0.56 +0.4 459,764 + GFF423 0.90 -0.1 459,765 - GFF423 0.90 +1.2 459,765 - GFF423 0.90 -0.0 459,844 + +1.2 459,844 + +0.3 459,844 + +0.4 459,845 - -0.4 459,845 - -0.8 459,845 - +1.0 460,006 - GFF424 0.24 -0.2 460,006 - GFF424 0.24 -0.7 460,006 - GFF424 0.24 +0.6 460,102 + GFF424 0.36 -1.1 460,102 + GFF424 0.36 +0.6 460,102 + GFF424 0.36 -1.0 460,103 - GFF424 0.36 -0.5 460,103 - GFF424 0.36 -0.5 460,103 - GFF424 0.36 -1.0 460,103 - GFF424 0.36 -0.7 460,103 - GFF424 0.36 +0.4 460,103 - GFF424 0.36 +1.6 460,103 - GFF424 0.36 -0.2
Or see this region's nucleotide sequence