Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4210 and GFF4211 overlap by 14 nucleotides GFF4211 and GFF4212 are separated by 111 nucleotides GFF4212 and GFF4213 are separated by 53 nucleotides GFF4213 and GFF4214 are separated by 36 nucleotides
GFF4210 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 125,455 to 126,255
GFF4210
GFF4211 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 126,242 to 126,913
GFF4211
GFF4212 - Methionine gamma-lyase (EC 4.4.1.11), at 127,025 to 128,233
GFF4212
GFF4213 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 128,287 to 129,027
GFF4213
GFF4214 - L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 2 AapM, at 129,064 to 130,173
GFF4214
Position (kb) 127
128
129 Strain fitness (log2 ratio) -2
-1
0
1
2 at 126.414 kb on + strand, within GFF4211 at 126.414 kb on + strand, within GFF4211 at 126.415 kb on - strand, within GFF4211 at 126.420 kb on + strand, within GFF4211 at 126.421 kb on - strand, within GFF4211 at 126.421 kb on - strand, within GFF4211 at 126.917 kb on + strand at 127.590 kb on + strand, within GFF4212 at 127.591 kb on - strand, within GFF4212 at 127.829 kb on + strand, within GFF4212 at 127.830 kb on - strand, within GFF4212 at 127.887 kb on + strand, within GFF4212 at 127.888 kb on - strand, within GFF4212 at 127.888 kb on - strand, within GFF4212 at 128.052 kb on + strand, within GFF4212 at 128.059 kb on - strand, within GFF4212 at 128.059 kb on - strand, within GFF4212 at 128.059 kb on - strand, within GFF4212 at 128.131 kb on - strand at 129.138 kb on - strand at 129.138 kb on - strand at 129.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 126,414 + GFF4211 0.26 -0.7 126,414 + GFF4211 0.26 -0.7 126,415 - GFF4211 0.26 -0.3 126,420 + GFF4211 0.26 +0.4 126,421 - GFF4211 0.27 -2.2 126,421 - GFF4211 0.27 -0.1 126,917 + -0.1 127,590 + GFF4212 0.47 +0.0 127,591 - GFF4212 0.47 +0.2 127,829 + GFF4212 0.67 +0.3 127,830 - GFF4212 0.67 -0.3 127,887 + GFF4212 0.71 +0.1 127,888 - GFF4212 0.71 +1.9 127,888 - GFF4212 0.71 +1.3 128,052 + GFF4212 0.85 +0.7 128,059 - GFF4212 0.86 -1.8 128,059 - GFF4212 0.86 -0.7 128,059 - GFF4212 0.86 -0.1 128,131 - -0.9 129,138 - -0.3 129,138 - -0.1 129,173 + +0.2
Or see this region's nucleotide sequence