Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF420 and GFF422 are separated by 10 nucleotides GFF422 and GFF421 overlap by 9 nucleotides GFF421 and GFF423 are separated by 31 nucleotides GFF423 and GFF424 overlap by 4 nucleotides
GFF420 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 454,739 to 456,301
GFF420
GFF422 - no description, at 456,312 to 456,452
GFF422
GFF421 - hypothetical protein, at 456,444 to 459,227
GFF421
GFF423 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 459,259 to 459,822
GFF423
GFF424 - Cobalamin synthase (EC 2.7.8.26), at 459,819 to 460,613
GFF424
Position (kb) 456
457
458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.730 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.911 kb on - strand, within GFF420 at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.771 kb on + strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.906 kb on + strand, within GFF421 at 457.044 kb on + strand, within GFF421 at 457.044 kb on + strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.219 kb on - strand, within GFF421 at 457.219 kb on - strand, within GFF421 at 457.219 kb on - strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.470 kb on + strand, within GFF421 at 457.471 kb on - strand, within GFF421 at 457.471 kb on - strand, within GFF421 at 457.471 kb on - strand, within GFF421 at 457.471 kb on - strand, within GFF421 at 457.471 kb on - strand, within GFF421 at 457.471 kb on - strand, within GFF421 at 457.471 kb on - strand, within GFF421 at 457.783 kb on - strand, within GFF421 at 457.783 kb on - strand, within GFF421 at 458.004 kb on + strand, within GFF421 at 458.004 kb on + strand, within GFF421 at 458.004 kb on + strand, within GFF421 at 458.005 kb on - strand, within GFF421 at 458.005 kb on - strand, within GFF421 at 458.005 kb on - strand, within GFF421 at 458.005 kb on - strand, within GFF421 at 458.005 kb on - strand, within GFF421 at 458.005 kb on - strand, within GFF421 at 458.136 kb on + strand, within GFF421 at 458.136 kb on + strand, within GFF421 at 458.136 kb on + strand, within GFF421 at 458.136 kb on + strand, within GFF421 at 458.136 kb on + strand, within GFF421 at 458.136 kb on + strand, within GFF421 at 458.137 kb on - strand, within GFF421 at 458.137 kb on - strand, within GFF421 at 458.137 kb on - strand, within GFF421 at 458.137 kb on - strand, within GFF421 at 458.137 kb on - strand, within GFF421 at 458.137 kb on - strand, within GFF421 at 458.137 kb on - strand, within GFF421 at 458.175 kb on + strand, within GFF421 at 458.175 kb on + strand, within GFF421 at 458.176 kb on - strand, within GFF421 at 458.176 kb on - strand, within GFF421 at 458.176 kb on - strand, within GFF421 at 458.176 kb on - strand, within GFF421 at 458.176 kb on - strand, within GFF421 at 458.176 kb on - strand, within GFF421 at 458.265 kb on + strand, within GFF421 at 458.265 kb on + strand, within GFF421 at 458.265 kb on + strand, within GFF421 at 458.265 kb on + strand, within GFF421 at 458.265 kb on + strand, within GFF421 at 458.265 kb on + strand, within GFF421 at 458.266 kb on - strand, within GFF421 at 458.266 kb on - strand, within GFF421 at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.144 kb on + strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.145 kb on - strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.225 kb on + strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.226 kb on - strand at 459.576 kb on - strand, within GFF423 at 459.764 kb on + strand, within GFF423 at 459.765 kb on - strand, within GFF423 at 459.765 kb on - strand, within GFF423 at 459.844 kb on + strand at 459.844 kb on + strand at 459.844 kb on + strand at 459.845 kb on - strand at 459.845 kb on - strand at 459.845 kb on - strand at 460.006 kb on - strand, within GFF424 at 460.006 kb on - strand, within GFF424 at 460.006 kb on - strand, within GFF424 at 460.102 kb on + strand, within GFF424 at 460.102 kb on + strand, within GFF424 at 460.102 kb on + strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424 at 460.103 kb on - strand, within GFF424
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 455,730 + GFF420 0.63 -0.5 455,910 + GFF420 0.75 +0.3 455,910 + GFF420 0.75 -0.0 455,910 + GFF420 0.75 +0.4 455,910 + GFF420 0.75 +0.9 455,910 + GFF420 0.75 -0.7 455,910 + GFF420 0.75 -0.9 455,911 - GFF420 0.75 -0.5 456,303 + -0.6 456,303 + -1.0 456,303 + -0.0 456,303 + +0.8 456,303 + -0.9 456,303 + -1.0 456,303 + -0.2 456,303 + -0.9 456,303 + -0.8 456,303 + -0.8 456,303 + +0.4 456,303 + -1.8 456,303 + +0.1 456,303 + -0.4 456,303 + -2.1 456,303 + +0.5 456,303 + -0.6 456,303 + +0.1 456,303 + -0.1 456,303 + -0.3 456,304 - +0.8 456,304 - -0.2 456,304 - -0.1 456,304 - -0.4 456,304 - -1.3 456,304 - +0.4 456,304 - +0.6 456,304 - -0.1 456,304 - -0.1 456,304 - -0.7 456,304 - -0.8 456,304 - +0.5 456,304 - -1.2 456,400 + GFF422 0.62 -1.0 456,400 + GFF422 0.62 +0.5 456,400 + GFF422 0.62 +0.4 456,400 + GFF422 0.62 -0.3 456,400 + GFF422 0.62 +1.1 456,400 + GFF422 0.62 -0.4 456,401 - GFF422 0.63 +0.2 456,401 - GFF422 0.63 +0.7 456,401 - GFF422 0.63 +0.5 456,401 - GFF422 0.63 -0.0 456,401 - GFF422 0.63 +0.2 456,401 - GFF422 0.63 -0.7 456,401 - GFF422 0.63 -0.2 456,401 - GFF422 0.63 -0.6 456,401 - GFF422 0.63 +0.2 456,401 - GFF422 0.63 -0.6 456,401 - GFF422 0.63 +0.1 456,771 + GFF421 0.12 +0.8 456,772 - GFF421 0.12 -0.1 456,772 - GFF421 0.12 +0.1 456,772 - GFF421 0.12 -1.5 456,906 + GFF421 0.17 +1.4 457,044 + GFF421 0.22 -0.0 457,044 + GFF421 0.22 -0.5 457,045 - GFF421 0.22 -0.9 457,045 - GFF421 0.22 -0.9 457,045 - GFF421 0.22 -0.2 457,045 - GFF421 0.22 +0.7 457,218 + GFF421 0.28 -1.1 457,218 + GFF421 0.28 +0.3 457,218 + GFF421 0.28 -0.6 457,218 + GFF421 0.28 -0.8 457,219 - GFF421 0.28 +1.0 457,219 - GFF421 0.28 -1.0 457,219 - GFF421 0.28 -0.0 457,470 + GFF421 0.37 +0.7 457,470 + GFF421 0.37 -0.0 457,470 + GFF421 0.37 -0.7 457,470 + GFF421 0.37 +0.7 457,470 + GFF421 0.37 -0.3 457,470 + GFF421 0.37 -1.2 457,470 + GFF421 0.37 -1.2 457,470 + GFF421 0.37 -0.1 457,470 + GFF421 0.37 +0.1 457,470 + GFF421 0.37 -1.8 457,470 + GFF421 0.37 -0.5 457,470 + GFF421 0.37 -0.8 457,470 + GFF421 0.37 +0.7 457,470 + GFF421 0.37 -0.1 457,470 + GFF421 0.37 -0.6 457,470 + GFF421 0.37 -0.1 457,470 + GFF421 0.37 +0.1 457,471 - GFF421 0.37 +2.0 457,471 - GFF421 0.37 -0.5 457,471 - GFF421 0.37 -0.0 457,471 - GFF421 0.37 -0.1 457,471 - GFF421 0.37 +0.2 457,471 - GFF421 0.37 +0.1 457,471 - GFF421 0.37 +0.4 457,783 - GFF421 0.48 -0.2 457,783 - GFF421 0.48 -0.6 458,004 + GFF421 0.56 +0.9 458,004 + GFF421 0.56 +1.2 458,004 + GFF421 0.56 -0.0 458,005 - GFF421 0.56 -0.1 458,005 - GFF421 0.56 +0.2 458,005 - GFF421 0.56 -0.7 458,005 - GFF421 0.56 +0.1 458,005 - GFF421 0.56 -2.0 458,005 - GFF421 0.56 +0.3 458,136 + GFF421 0.61 -0.5 458,136 + GFF421 0.61 -0.4 458,136 + GFF421 0.61 -0.4 458,136 + GFF421 0.61 -0.7 458,136 + GFF421 0.61 -1.0 458,136 + GFF421 0.61 -0.3 458,137 - GFF421 0.61 +0.5 458,137 - GFF421 0.61 -1.0 458,137 - GFF421 0.61 +0.2 458,137 - GFF421 0.61 -0.9 458,137 - GFF421 0.61 -0.4 458,137 - GFF421 0.61 -0.3 458,137 - GFF421 0.61 -0.3 458,175 + GFF421 0.62 -0.9 458,175 + GFF421 0.62 -0.3 458,176 - GFF421 0.62 -0.7 458,176 - GFF421 0.62 -2.3 458,176 - GFF421 0.62 +0.7 458,176 - GFF421 0.62 -0.1 458,176 - GFF421 0.62 +0.2 458,176 - GFF421 0.62 -0.1 458,265 + GFF421 0.65 -0.1 458,265 + GFF421 0.65 +0.4 458,265 + GFF421 0.65 -0.9 458,265 + GFF421 0.65 +0.5 458,265 + GFF421 0.65 -0.7 458,265 + GFF421 0.65 -1.1 458,266 - GFF421 0.65 -0.1 458,266 - GFF421 0.65 +1.3 459,144 + +0.5 459,144 + +0.4 459,144 + -1.2 459,144 + +0.8 459,144 + -0.5 459,144 + +1.0 459,144 + -0.2 459,144 + -0.9 459,144 + -1.0 459,144 + -0.5 459,144 + -0.4 459,144 + -1.6 459,144 + +2.0 459,144 + -1.1 459,144 + -1.1 459,144 + +0.0 459,144 + +0.0 459,144 + -0.8 459,144 + +0.3 459,144 + +0.8 459,144 + +0.4 459,145 - -0.3 459,145 - -0.9 459,145 - +1.1 459,145 - -0.4 459,145 - -1.1 459,145 - -1.5 459,145 - -1.3 459,145 - +0.7 459,145 - +0.1 459,145 - -0.3 459,145 - -0.0 459,145 - +1.2 459,145 - +0.0 459,145 - -0.6 459,145 - -0.0 459,145 - -0.3 459,145 - -0.9 459,145 - +0.8 459,225 + -0.8 459,225 + +1.6 459,225 + +0.4 459,225 + +0.7 459,225 + -2.1 459,225 + +1.0 459,225 + -0.3 459,225 + +0.1 459,226 - -1.6 459,226 - -0.3 459,226 - -0.7 459,226 - -0.2 459,226 - -1.2 459,226 - -1.1 459,226 - +0.7 459,576 - GFF423 0.56 +0.4 459,764 + GFF423 0.90 -0.1 459,765 - GFF423 0.90 +1.2 459,765 - GFF423 0.90 -0.0 459,844 + +1.2 459,844 + +0.3 459,844 + +0.4 459,845 - -0.4 459,845 - -0.8 459,845 - +1.0 460,006 - GFF424 0.24 -0.2 460,006 - GFF424 0.24 -0.7 460,006 - GFF424 0.24 +0.6 460,102 + GFF424 0.36 -1.1 460,102 + GFF424 0.36 +0.6 460,102 + GFF424 0.36 -1.0 460,103 - GFF424 0.36 -0.5 460,103 - GFF424 0.36 -0.5 460,103 - GFF424 0.36 -1.0 460,103 - GFF424 0.36 -0.7 460,103 - GFF424 0.36 +0.4 460,103 - GFF424 0.36 +1.6 460,103 - GFF424 0.36 -0.2
Or see this region's nucleotide sequence