Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4167 and GFF4168 are separated by 1 nucleotides GFF4168 and GFF4169 overlap by 4 nucleotides GFF4169 and GFF4170 are separated by 19 nucleotides
GFF4167 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 71,498 to 73,120
GFF4167
GFF4168 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 73,122 to 73,937
GFF4168
GFF4169 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 73,934 to 74,878
GFF4169
GFF4170 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 74,898 to 76,454
GFF4170
Position (kb) 73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.314 kb on + strand, within GFF4167 at 72.314 kb on + strand, within GFF4167 at 72.366 kb on + strand, within GFF4167 at 72.366 kb on + strand, within GFF4167 at 72.367 kb on - strand, within GFF4167 at 72.367 kb on - strand, within GFF4167 at 72.367 kb on - strand, within GFF4167 at 73.453 kb on + strand, within GFF4168 at 73.454 kb on - strand, within GFF4168 at 73.454 kb on - strand, within GFF4168 at 73.454 kb on - strand, within GFF4168 at 73.454 kb on - strand, within GFF4168 at 73.968 kb on + strand at 74.001 kb on + strand at 74.235 kb on + strand, within GFF4169 at 74.236 kb on - strand, within GFF4169 at 74.236 kb on - strand, within GFF4169 at 74.244 kb on + strand, within GFF4169 at 74.244 kb on + strand, within GFF4169 at 74.245 kb on - strand, within GFF4169 at 74.245 kb on - strand, within GFF4169 at 74.245 kb on - strand, within GFF4169 at 74.245 kb on - strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.341 kb on - strand, within GFF4169 at 74.341 kb on - strand, within GFF4169 at 74.341 kb on - strand, within GFF4169 at 74.421 kb on + strand, within GFF4169 at 74.422 kb on - strand, within GFF4169 at 74.422 kb on - strand, within GFF4169 at 74.422 kb on - strand, within GFF4169
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 72,314 + GFF4167 0.50 -1.1 72,314 + GFF4167 0.50 -0.1 72,366 + GFF4167 0.53 -0.7 72,366 + GFF4167 0.53 -0.8 72,367 - GFF4167 0.54 +1.5 72,367 - GFF4167 0.54 -1.6 72,367 - GFF4167 0.54 -2.2 73,453 + GFF4168 0.41 -0.5 73,454 - GFF4168 0.41 -0.9 73,454 - GFF4168 0.41 -0.7 73,454 - GFF4168 0.41 -0.3 73,454 - GFF4168 0.41 -0.7 73,968 + -0.7 74,001 + -0.3 74,235 + GFF4169 0.32 -0.8 74,236 - GFF4169 0.32 -0.6 74,236 - GFF4169 0.32 -0.8 74,244 + GFF4169 0.33 +2.3 74,244 + GFF4169 0.33 +0.0 74,245 - GFF4169 0.33 +0.9 74,245 - GFF4169 0.33 +0.8 74,245 - GFF4169 0.33 -0.2 74,245 - GFF4169 0.33 -1.4 74,340 + GFF4169 0.43 -1.7 74,340 + GFF4169 0.43 +0.2 74,340 + GFF4169 0.43 -0.8 74,340 + GFF4169 0.43 +1.5 74,340 + GFF4169 0.43 -0.2 74,340 + GFF4169 0.43 +0.9 74,341 - GFF4169 0.43 -1.1 74,341 - GFF4169 0.43 -1.5 74,341 - GFF4169 0.43 -0.7 74,421 + GFF4169 0.52 +0.5 74,422 - GFF4169 0.52 -0.6 74,422 - GFF4169 0.52 +0.9 74,422 - GFF4169 0.52 -0.3
Or see this region's nucleotide sequence