Strain Fitness in Variovorax sp. SCN45 around GFF4162

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4160 and GFF4161 overlap by 17 nucleotidesGFF4161 and GFF4162 are separated by 11 nucleotidesGFF4162 and GFF4163 are separated by 27 nucleotides GFF4160 - Demethylmenaquinone methyltransferase-like protein, at 64,964 to 65,719 GFF4160 GFF4161 - hypothetical protein, at 65,703 to 66,131 GFF4161 GFF4162 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 66,143 to 67,672 GFF4162 GFF4163 - Phosphopentomutase (EC 5.4.2.7), at 67,700 to 68,908 GFF4163 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.177 kb on + strand, within GFF4160at 65.178 kb on - strand, within GFF4160at 65.474 kb on + strand, within GFF4160at 65.474 kb on + strand, within GFF4160at 65.475 kb on - strand, within GFF4160at 65.475 kb on - strand, within GFF4160at 65.574 kb on - strand, within GFF4160at 65.574 kb on - strand, within GFF4160at 65.657 kb on + strandat 65.814 kb on + strand, within GFF4161at 65.922 kb on + strand, within GFF4161at 65.923 kb on - strand, within GFF4161at 65.941 kb on - strand, within GFF4161at 65.941 kb on - strand, within GFF4161at 65.947 kb on - strand, within GFF4161at 65.985 kb on + strand, within GFF4161at 66.054 kb on + strand, within GFF4161at 66.054 kb on + strand, within GFF4161at 66.055 kb on - strand, within GFF4161at 66.073 kb on - strand, within GFF4161at 66.073 kb on - strand, within GFF4161at 66.314 kb on + strand, within GFF4162at 66.315 kb on - strand, within GFF4162at 66.315 kb on - strand, within GFF4162at 66.546 kb on - strand, within GFF4162at 66.546 kb on - strand, within GFF4162at 66.587 kb on + strand, within GFF4162at 66.588 kb on - strand, within GFF4162at 66.588 kb on - strand, within GFF4162at 66.632 kb on + strand, within GFF4162at 66.632 kb on + strand, within GFF4162at 66.933 kb on - strand, within GFF4162at 67.277 kb on + strand, within GFF4162at 67.367 kb on + strand, within GFF4162at 67.601 kb on + strandat 67.602 kb on - strandat 67.602 kb on - strandat 67.602 kb on - strandat 67.603 kb on + strandat 68.001 kb on + strand, within GFF4163at 68.227 kb on - strand, within GFF4163at 68.227 kb on - strand, within GFF4163at 68.253 kb on + strand, within GFF4163at 68.581 kb on - strand, within GFF4163

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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65,177 + GFF4160 0.28 +0.9
65,178 - GFF4160 0.28 -0.7
65,474 + GFF4160 0.67 +0.2
65,474 + GFF4160 0.67 -0.5
65,475 - GFF4160 0.68 +1.3
65,475 - GFF4160 0.68 -0.2
65,574 - GFF4160 0.81 +1.0
65,574 - GFF4160 0.81 -0.1
65,657 + -0.1
65,814 + GFF4161 0.26 -1.0
65,922 + GFF4161 0.51 +0.5
65,923 - GFF4161 0.51 -0.4
65,941 - GFF4161 0.55 -0.3
65,941 - GFF4161 0.55 +0.1
65,947 - GFF4161 0.57 -0.4
65,985 + GFF4161 0.66 +0.0
66,054 + GFF4161 0.82 -0.9
66,054 + GFF4161 0.82 +0.2
66,055 - GFF4161 0.82 -1.1
66,073 - GFF4161 0.86 +0.3
66,073 - GFF4161 0.86 -1.8
66,314 + GFF4162 0.11 +0.3
66,315 - GFF4162 0.11 -0.3
66,315 - GFF4162 0.11 -0.5
66,546 - GFF4162 0.26 -0.1
66,546 - GFF4162 0.26 -0.7
66,587 + GFF4162 0.29 -0.2
66,588 - GFF4162 0.29 -0.4
66,588 - GFF4162 0.29 -0.8
66,632 + GFF4162 0.32 -0.5
66,632 + GFF4162 0.32 -1.5
66,933 - GFF4162 0.52 -0.3
67,277 + GFF4162 0.74 -0.3
67,367 + GFF4162 0.80 -0.6
67,601 + -0.4
67,602 - -0.6
67,602 - +0.2
67,602 - -0.6
67,603 + -1.3
68,001 + GFF4163 0.25 -0.5
68,227 - GFF4163 0.44 +0.5
68,227 - GFF4163 0.44 +2.5
68,253 + GFF4163 0.46 -0.9
68,581 - GFF4163 0.73 -0.4

Or see this region's nucleotide sequence