Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4138 and GFF4139 are separated by 6 nucleotides GFF4139 and GFF4140 are separated by 192 nucleotides GFF4140 and GFF4141 overlap by 4 nucleotides GFF4141 and GFF4142 are separated by 27 nucleotides
GFF4138 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 47,117 to 48,709
GFF4138
GFF4139 - probable epoxide hydrolase, at 48,716 to 49,645
GFF4139
GFF4140 - no description, at 49,838 to 50,137
GFF4140
GFF4141 - no description, at 50,134 to 50,250
GFF4141
GFF4142 - no description, at 50,278 to 50,634
GFF4142
Position (kb) 48
49
50 Strain fitness (log2 ratio) -2
-1
0
1 at 47.973 kb on - strand, within GFF4138 at 47.973 kb on - strand, within GFF4138 at 48.144 kb on - strand, within GFF4138 at 48.236 kb on + strand, within GFF4138 at 48.320 kb on + strand, within GFF4138 at 48.336 kb on - strand, within GFF4138 at 48.336 kb on - strand, within GFF4138 at 48.350 kb on + strand, within GFF4138 at 48.651 kb on - strand at 48.651 kb on - strand at 48.814 kb on - strand, within GFF4139 at 48.909 kb on - strand, within GFF4139 at 49.116 kb on + strand, within GFF4139 at 49.470 kb on + strand, within GFF4139 at 49.471 kb on - strand, within GFF4139 at 50.111 kb on + strand at 50.249 kb on - strand at 50.294 kb on - strand at 50.329 kb on + strand, within GFF4142 at 50.336 kb on - strand, within GFF4142 at 50.519 kb on - strand, within GFF4142 at 50.603 kb on - strand at 50.603 kb on - strand at 50.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 47,973 - GFF4138 0.54 +0.5 47,973 - GFF4138 0.54 -0.8 48,144 - GFF4138 0.64 -0.5 48,236 + GFF4138 0.70 -0.1 48,320 + GFF4138 0.76 -1.5 48,336 - GFF4138 0.77 -0.2 48,336 - GFF4138 0.77 -1.0 48,350 + GFF4138 0.77 +0.8 48,651 - -0.1 48,651 - +0.9 48,814 - GFF4139 0.11 -0.1 48,909 - GFF4139 0.21 +0.1 49,116 + GFF4139 0.43 -0.8 49,470 + GFF4139 0.81 +0.5 49,471 - GFF4139 0.81 +0.2 50,111 + -2.3 50,249 - -0.7 50,294 - +0.1 50,329 + GFF4142 0.14 -0.0 50,336 - GFF4142 0.16 -1.1 50,519 - GFF4142 0.68 -0.8 50,603 - -0.2 50,603 - -0.4 50,633 - -0.8
Or see this region's nucleotide sequence