Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4134 and GFF4135 overlap by 4 nucleotides GFF4135 and GFF4136 are separated by 16 nucleotides
GFF4134 - Small molecule metabolism, at 40,835 to 41,869
GFF4134
GFF4135 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 41,866 to 43,104
GFF4135
GFF4136 - hypothetical protein, at 43,121 to 46,051
GFF4136
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -1
0
1 at 41.001 kb on - strand, within GFF4134 at 41.001 kb on - strand, within GFF4134 at 41.110 kb on + strand, within GFF4134 at 41.198 kb on + strand, within GFF4134 at 41.198 kb on + strand, within GFF4134 at 41.285 kb on + strand, within GFF4134 at 41.381 kb on + strand, within GFF4134 at 41.382 kb on - strand, within GFF4134 at 41.382 kb on - strand, within GFF4134 at 41.433 kb on - strand, within GFF4134 at 41.436 kb on - strand, within GFF4134 at 41.436 kb on - strand, within GFF4134 at 41.456 kb on + strand, within GFF4134 at 41.456 kb on + strand, within GFF4134 at 41.720 kb on + strand, within GFF4134 at 41.721 kb on - strand, within GFF4134 at 41.739 kb on - strand, within GFF4134 at 42.121 kb on + strand, within GFF4135 at 42.122 kb on - strand, within GFF4135 at 42.379 kb on + strand, within GFF4135 at 42.379 kb on + strand, within GFF4135 at 42.379 kb on + strand, within GFF4135 at 42.380 kb on - strand, within GFF4135 at 42.406 kb on + strand, within GFF4135 at 42.406 kb on + strand, within GFF4135 at 42.567 kb on - strand, within GFF4135 at 42.593 kb on - strand, within GFF4135 at 43.224 kb on + strand at 43.225 kb on - strand at 43.368 kb on + strand at 43.462 kb on - strand, within GFF4136 at 43.515 kb on + strand, within GFF4136 at 43.516 kb on - strand, within GFF4136 at 43.630 kb on - strand, within GFF4136 at 43.900 kb on - strand, within GFF4136
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 41,001 - GFF4134 0.16 +0.8 41,001 - GFF4134 0.16 -0.0 41,110 + GFF4134 0.27 -0.7 41,198 + GFF4134 0.35 +1.0 41,198 + GFF4134 0.35 +0.1 41,285 + GFF4134 0.43 +0.5 41,381 + GFF4134 0.53 -0.5 41,382 - GFF4134 0.53 -0.2 41,382 - GFF4134 0.53 +0.1 41,433 - GFF4134 0.58 -0.2 41,436 - GFF4134 0.58 -0.2 41,436 - GFF4134 0.58 +0.1 41,456 + GFF4134 0.60 -1.3 41,456 + GFF4134 0.60 +0.4 41,720 + GFF4134 0.86 +0.5 41,721 - GFF4134 0.86 -0.2 41,739 - GFF4134 0.87 -0.6 42,121 + GFF4135 0.21 +0.4 42,122 - GFF4135 0.21 +1.2 42,379 + GFF4135 0.41 -0.4 42,379 + GFF4135 0.41 +1.5 42,379 + GFF4135 0.41 +0.3 42,380 - GFF4135 0.41 -0.2 42,406 + GFF4135 0.44 +0.1 42,406 + GFF4135 0.44 +0.1 42,567 - GFF4135 0.57 -0.1 42,593 - GFF4135 0.59 +1.3 43,224 + -0.5 43,225 - +1.5 43,368 + +0.5 43,462 - GFF4136 0.12 -1.0 43,515 + GFF4136 0.13 -0.5 43,516 - GFF4136 0.13 +0.3 43,630 - GFF4136 0.17 +1.1 43,900 - GFF4136 0.27 +0.2
Or see this region's nucleotide sequence