Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4088 and GFF4089 are separated by 57 nucleotides GFF4089 and GFF4090 overlap by 1 nucleotides GFF4090 and GFF4091 are separated by 0 nucleotides
GFF4088 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 300,890 to 301,816
GFF4088
GFF4089 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 301,874 to 302,611
GFF4089
GFF4090 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 302,611 to 303,300
GFF4090
GFF4091 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 303,301 to 304,044
GFF4091
Position (kb) 301
302
303 Strain fitness (log2 ratio) -1
0
1 at 301.607 kb on + strand, within GFF4088 at 301.608 kb on - strand, within GFF4088 at 301.814 kb on + strand at 301.815 kb on - strand at 301.815 kb on - strand at 301.860 kb on - strand at 301.880 kb on + strand at 302.075 kb on + strand, within GFF4089 at 302.075 kb on + strand, within GFF4089 at 302.075 kb on + strand, within GFF4089 at 302.076 kb on - strand, within GFF4089 at 302.076 kb on - strand, within GFF4089 at 302.149 kb on - strand, within GFF4089 at 302.477 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.540 kb on + strand at 302.541 kb on - strand at 302.789 kb on - strand, within GFF4090 at 302.905 kb on + strand, within GFF4090 at 302.905 kb on + strand, within GFF4090 at 302.906 kb on - strand, within GFF4090 at 302.944 kb on + strand, within GFF4090 at 302.947 kb on + strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.340 kb on + strand at 303.341 kb on - strand at 303.496 kb on - strand, within GFF4091 at 303.525 kb on - strand, within GFF4091
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 301,607 + GFF4088 0.77 +0.8 301,608 - GFF4088 0.77 -1.7 301,814 + +0.8 301,815 - -0.0 301,815 - -0.3 301,860 - -0.4 301,880 + -0.7 302,075 + GFF4089 0.27 -0.1 302,075 + GFF4089 0.27 +0.5 302,075 + GFF4089 0.27 -0.3 302,076 - GFF4089 0.27 +0.2 302,076 - GFF4089 0.27 +0.0 302,149 - GFF4089 0.37 +0.0 302,477 + GFF4089 0.82 +0.2 302,525 + GFF4089 0.88 -0.2 302,525 + GFF4089 0.88 +0.2 302,525 + GFF4089 0.88 -0.1 302,525 + GFF4089 0.88 +1.4 302,540 + +0.1 302,541 - +0.7 302,789 - GFF4090 0.26 +0.2 302,905 + GFF4090 0.43 -0.0 302,905 + GFF4090 0.43 +0.8 302,906 - GFF4090 0.43 +0.7 302,944 + GFF4090 0.48 +0.0 302,947 + GFF4090 0.49 +1.2 303,206 - GFF4090 0.86 -0.0 303,206 - GFF4090 0.86 -0.3 303,206 - GFF4090 0.86 -0.6 303,340 + +0.5 303,341 - +0.8 303,496 - GFF4091 0.26 +0.2 303,525 - GFF4091 0.30 -0.9
Or see this region's nucleotide sequence