Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4068 and GFF4069 overlap by 4 nucleotides GFF4069 and GFF4070 are separated by 191 nucleotides GFF4070 and GFF4071 are separated by 67 nucleotides
GFF4068 - Heavy metal sensor histidine kinase, at 283,048 to 284,445
GFF4068
GFF4069 - DNA-binding heavy metal response regulator, at 284,442 to 285,125
GFF4069
GFF4070 - no description, at 285,317 to 285,712
GFF4070
GFF4071 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 285,780 to 286,205
GFF4071
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 283.721 kb on + strand, within GFF4068 at 283.721 kb on + strand, within GFF4068 at 283.787 kb on + strand, within GFF4068 at 283.788 kb on - strand, within GFF4068 at 283.996 kb on + strand, within GFF4068 at 283.996 kb on + strand, within GFF4068 at 283.996 kb on + strand, within GFF4068 at 283.996 kb on + strand, within GFF4068 at 283.996 kb on + strand, within GFF4068 at 283.996 kb on + strand, within GFF4068 at 283.996 kb on + strand, within GFF4068 at 283.997 kb on - strand, within GFF4068 at 284.088 kb on - strand, within GFF4068 at 284.279 kb on + strand, within GFF4068 at 284.280 kb on - strand, within GFF4068 at 284.476 kb on + strand at 284.476 kb on + strand at 284.477 kb on - strand at 284.477 kb on - strand at 284.477 kb on - strand at 284.749 kb on + strand, within GFF4069 at 284.749 kb on + strand, within GFF4069 at 284.749 kb on + strand, within GFF4069 at 284.750 kb on - strand, within GFF4069 at 284.750 kb on - strand, within GFF4069 at 284.750 kb on - strand, within GFF4069 at 284.836 kb on + strand, within GFF4069 at 284.837 kb on - strand, within GFF4069 at 285.082 kb on + strand at 285.136 kb on + strand at 285.137 kb on - strand at 285.163 kb on - strand at 285.172 kb on + strand at 285.172 kb on + strand at 285.205 kb on - strand at 285.208 kb on + strand at 285.209 kb on - strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.440 kb on + strand, within GFF4070 at 285.440 kb on + strand, within GFF4070 at 285.441 kb on - strand, within GFF4070 at 285.441 kb on - strand, within GFF4070 at 285.484 kb on - strand, within GFF4070 at 285.553 kb on + strand, within GFF4070 at 285.554 kb on - strand, within GFF4070 at 285.767 kb on + strand at 285.768 kb on - strand at 286.059 kb on - strand, within GFF4071
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 283,721 + GFF4068 0.48 -0.4 283,721 + GFF4068 0.48 +1.1 283,787 + GFF4068 0.53 +0.3 283,788 - GFF4068 0.53 -0.3 283,996 + GFF4068 0.68 +0.0 283,996 + GFF4068 0.68 +0.4 283,996 + GFF4068 0.68 -0.1 283,996 + GFF4068 0.68 +0.8 283,996 + GFF4068 0.68 -0.4 283,996 + GFF4068 0.68 +0.4 283,996 + GFF4068 0.68 +0.7 283,997 - GFF4068 0.68 +0.8 284,088 - GFF4068 0.74 +0.1 284,279 + GFF4068 0.88 +0.4 284,280 - GFF4068 0.88 -0.9 284,476 + +0.4 284,476 + +0.3 284,477 - +0.0 284,477 - -1.2 284,477 - -2.2 284,749 + GFF4069 0.45 +0.6 284,749 + GFF4069 0.45 +0.9 284,749 + GFF4069 0.45 -1.7 284,750 - GFF4069 0.45 -0.1 284,750 - GFF4069 0.45 +2.8 284,750 - GFF4069 0.45 +0.8 284,836 + GFF4069 0.58 +0.4 284,837 - GFF4069 0.58 +0.9 285,082 + +0.2 285,136 + -0.5 285,137 - -0.1 285,163 - +0.6 285,172 + -0.5 285,172 + -0.8 285,205 - -0.5 285,208 + +0.2 285,209 - -0.1 285,313 + +0.6 285,313 + +0.9 285,313 + +0.9 285,313 + -0.2 285,313 + +0.3 285,313 + -0.5 285,313 + -0.0 285,314 - +0.0 285,314 - -0.0 285,314 - +1.1 285,314 - -0.5 285,440 + GFF4070 0.31 -0.2 285,440 + GFF4070 0.31 +0.5 285,441 - GFF4070 0.31 -0.5 285,441 - GFF4070 0.31 +0.8 285,484 - GFF4070 0.42 +0.8 285,553 + GFF4070 0.60 +0.8 285,554 - GFF4070 0.60 -0.3 285,767 + +0.1 285,768 - +0.3 286,059 - GFF4071 0.65 -0.5
Or see this region's nucleotide sequence