Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4056 and GFF4057 overlap by 4 nucleotides GFF4057 and GFF4058 overlap by 4 nucleotides
GFF4056 - Copper/silver efflux RND transporter, transmembrane protein CusA, at 266,783 to 269,947
GFF4056
GFF4057 - Copper/silver efflux RND transporter, membrane fusion protein CusB, at 269,944 to 271,647
GFF4057
GFF4058 - Copper/silver efflux RND transporter, outer membrane protein CusC, at 271,644 to 272,999
GFF4058
Position (kb) 269
270
271
272 Strain fitness (log2 ratio) -1
0
1 at 268.974 kb on + strand, within GFF4056 at 269.263 kb on - strand, within GFF4056 at 269.263 kb on - strand, within GFF4056 at 269.529 kb on + strand, within GFF4056 at 269.530 kb on - strand, within GFF4056 at 269.530 kb on - strand, within GFF4056 at 269.667 kb on + strand at 269.667 kb on + strand at 269.668 kb on - strand at 269.694 kb on + strand at 269.790 kb on + strand at 269.863 kb on - strand at 269.863 kb on - strand at 270.271 kb on - strand, within GFF4057 at 271.371 kb on - strand, within GFF4057 at 271.577 kb on + strand at 271.577 kb on + strand at 271.578 kb on - strand at 271.578 kb on - strand at 271.900 kb on + strand, within GFF4058 at 271.900 kb on + strand, within GFF4058 at 272.055 kb on + strand, within GFF4058 at 272.120 kb on - strand, within GFF4058 at 272.120 kb on - strand, within GFF4058 at 272.123 kb on + strand, within GFF4058 at 272.123 kb on + strand, within GFF4058 at 272.123 kb on + strand, within GFF4058 at 272.123 kb on + strand, within GFF4058 at 272.522 kb on - strand, within GFF4058 at 272.577 kb on - strand, within GFF4058
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 268,974 + GFF4056 0.69 +0.8 269,263 - GFF4056 0.78 +0.6 269,263 - GFF4056 0.78 -0.5 269,529 + GFF4056 0.87 +0.1 269,530 - GFF4056 0.87 -1.5 269,530 - GFF4056 0.87 -1.0 269,667 + +0.1 269,667 + +0.7 269,668 - +0.7 269,694 + -0.2 269,790 + +0.6 269,863 - +0.5 269,863 - +0.5 270,271 - GFF4057 0.19 +0.7 271,371 - GFF4057 0.84 +0.3 271,577 + +1.0 271,577 + -0.4 271,578 - +0.1 271,578 - +0.1 271,900 + GFF4058 0.19 -0.8 271,900 + GFF4058 0.19 -0.3 272,055 + GFF4058 0.30 -0.2 272,120 - GFF4058 0.35 -0.2 272,120 - GFF4058 0.35 -0.1 272,123 + GFF4058 0.35 +0.3 272,123 + GFF4058 0.35 -0.4 272,123 + GFF4058 0.35 -0.4 272,123 + GFF4058 0.35 -0.1 272,522 - GFF4058 0.65 +0.2 272,577 - GFF4058 0.69 -0.2
Or see this region's nucleotide sequence