Strain Fitness in Variovorax sp. SCN45 around GFF4029

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4028 and GFF4029 are separated by 129 nucleotidesGFF4029 and GFF4030 are separated by 188 nucleotides GFF4028 - Cytochrome c, class I, at 233,719 to 235,668 GFF4028 GFF4029 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 235,798 to 238,728 GFF4029 GFF4030 - Transcriptional regulator, MerR family, at 238,917 to 239,321 GFF4030 Position (kb) 235 236 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 235.100 kb on + strand, within GFF4028at 235.100 kb on + strand, within GFF4028at 235.100 kb on + strand, within GFF4028at 235.252 kb on + strand, within GFF4028at 235.252 kb on + strand, within GFF4028at 235.252 kb on + strand, within GFF4028at 235.253 kb on - strand, within GFF4028at 235.290 kb on - strand, within GFF4028at 235.532 kb on + strandat 235.533 kb on - strandat 235.640 kb on + strandat 235.640 kb on + strandat 235.640 kb on + strandat 235.641 kb on - strandat 235.641 kb on - strandat 235.674 kb on - strandat 235.932 kb on + strandat 235.932 kb on + strandat 235.964 kb on - strandat 236.101 kb on + strand, within GFF4029at 236.101 kb on + strand, within GFF4029at 236.382 kb on + strand, within GFF4029at 236.496 kb on - strand, within GFF4029at 236.498 kb on + strand, within GFF4029at 236.498 kb on + strand, within GFF4029at 236.498 kb on + strand, within GFF4029at 236.498 kb on + strand, within GFF4029at 236.498 kb on + strand, within GFF4029at 236.499 kb on - strand, within GFF4029at 236.499 kb on - strand, within GFF4029at 236.499 kb on - strand, within GFF4029at 236.499 kb on - strand, within GFF4029at 236.768 kb on + strand, within GFF4029at 236.769 kb on - strand, within GFF4029at 236.821 kb on + strand, within GFF4029at 236.821 kb on + strand, within GFF4029at 236.822 kb on - strand, within GFF4029at 236.891 kb on + strand, within GFF4029at 236.891 kb on + strand, within GFF4029at 236.973 kb on + strand, within GFF4029at 236.974 kb on - strand, within GFF4029at 236.974 kb on - strand, within GFF4029at 236.975 kb on + strand, within GFF4029at 236.975 kb on + strand, within GFF4029at 236.975 kb on + strand, within GFF4029at 236.975 kb on + strand, within GFF4029at 236.975 kb on + strand, within GFF4029at 236.975 kb on + strand, within GFF4029at 236.976 kb on - strand, within GFF4029at 236.976 kb on - strand, within GFF4029at 236.976 kb on - strand, within GFF4029at 236.976 kb on - strand, within GFF4029at 236.976 kb on - strand, within GFF4029at 237.253 kb on + strand, within GFF4029at 237.253 kb on + strand, within GFF4029at 237.256 kb on + strand, within GFF4029at 237.256 kb on + strand, within GFF4029at 237.257 kb on - strand, within GFF4029at 237.484 kb on + strand, within GFF4029at 237.485 kb on - strand, within GFF4029at 237.485 kb on - strand, within GFF4029at 237.485 kb on - strand, within GFF4029at 237.485 kb on - strand, within GFF4029at 237.917 kb on + strand, within GFF4029at 237.917 kb on + strand, within GFF4029at 237.918 kb on - strand, within GFF4029at 238.159 kb on + strand, within GFF4029at 238.299 kb on + strand, within GFF4029at 238.300 kb on - strand, within GFF4029at 238.609 kb on - strandat 238.609 kb on - strandat 238.771 kb on + strandat 238.813 kb on + strandat 238.814 kb on - strandat 238.814 kb on - strandat 238.854 kb on + strandat 238.855 kb on - strandat 238.974 kb on + strand, within GFF4030at 238.974 kb on + strand, within GFF4030at 238.975 kb on - strand, within GFF4030at 238.975 kb on - strand, within GFF4030at 239.023 kb on - strand, within GFF4030at 239.023 kb on - strand, within GFF4030at 239.319 kb on + strandat 239.319 kb on + strandat 239.552 kb on - strandat 239.552 kb on - strandat 239.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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235,100 + GFF4028 0.71 +0.5
235,100 + GFF4028 0.71 +1.2
235,100 + GFF4028 0.71 -0.0
235,252 + GFF4028 0.79 -0.3
235,252 + GFF4028 0.79 +1.8
235,252 + GFF4028 0.79 +0.9
235,253 - GFF4028 0.79 -0.4
235,290 - GFF4028 0.81 -0.2
235,532 + -0.1
235,533 - -0.3
235,640 + +0.8
235,640 + -0.4
235,640 + +1.8
235,641 - +2.2
235,641 - +0.3
235,674 - -0.1
235,932 + +0.7
235,932 + -0.4
235,964 - +0.2
236,101 + GFF4029 0.10 -0.3
236,101 + GFF4029 0.10 +0.4
236,382 + GFF4029 0.20 -1.4
236,496 - GFF4029 0.24 +0.3
236,498 + GFF4029 0.24 +0.1
236,498 + GFF4029 0.24 +0.2
236,498 + GFF4029 0.24 -0.2
236,498 + GFF4029 0.24 +0.2
236,498 + GFF4029 0.24 -0.4
236,499 - GFF4029 0.24 -0.7
236,499 - GFF4029 0.24 -0.6
236,499 - GFF4029 0.24 -0.3
236,499 - GFF4029 0.24 -0.5
236,768 + GFF4029 0.33 +1.8
236,769 - GFF4029 0.33 +0.3
236,821 + GFF4029 0.35 -0.1
236,821 + GFF4029 0.35 +1.2
236,822 - GFF4029 0.35 +0.6
236,891 + GFF4029 0.37 +0.1
236,891 + GFF4029 0.37 +0.7
236,973 + GFF4029 0.40 +0.1
236,974 - GFF4029 0.40 +0.5
236,974 - GFF4029 0.40 -0.1
236,975 + GFF4029 0.40 +0.4
236,975 + GFF4029 0.40 +0.3
236,975 + GFF4029 0.40 -0.2
236,975 + GFF4029 0.40 +0.8
236,975 + GFF4029 0.40 -0.1
236,975 + GFF4029 0.40 -0.3
236,976 - GFF4029 0.40 -0.2
236,976 - GFF4029 0.40 +0.0
236,976 - GFF4029 0.40 -0.0
236,976 - GFF4029 0.40 +0.9
236,976 - GFF4029 0.40 +0.9
237,253 + GFF4029 0.50 -1.8
237,253 + GFF4029 0.50 +0.2
237,256 + GFF4029 0.50 +0.8
237,256 + GFF4029 0.50 +0.3
237,257 - GFF4029 0.50 +0.0
237,484 + GFF4029 0.58 +0.2
237,485 - GFF4029 0.58 +0.6
237,485 - GFF4029 0.58 -0.1
237,485 - GFF4029 0.58 +0.7
237,485 - GFF4029 0.58 -0.2
237,917 + GFF4029 0.72 +0.1
237,917 + GFF4029 0.72 +0.4
237,918 - GFF4029 0.72 +0.0
238,159 + GFF4029 0.81 +1.8
238,299 + GFF4029 0.85 -0.4
238,300 - GFF4029 0.85 +0.2
238,609 - +0.5
238,609 - +0.4
238,771 + -0.4
238,813 + -1.8
238,814 - +1.5
238,814 - -0.2
238,854 + +0.1
238,855 - -0.2
238,974 + GFF4030 0.14 +1.8
238,974 + GFF4030 0.14 +0.5
238,975 - GFF4030 0.14 -0.6
238,975 - GFF4030 0.14 +0.2
239,023 - GFF4030 0.26 +1.5
239,023 - GFF4030 0.26 -0.4
239,319 + +1.8
239,319 + +0.9
239,552 - -0.1
239,552 - -0.1
239,689 + -0.3

Or see this region's nucleotide sequence