Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4025 and GFF4026 are separated by 10 nucleotides GFF4026 and GFF4027 overlap by 4 nucleotides GFF4027 and GFF4028 are separated by 165 nucleotides GFF4028 and GFF4029 are separated by 129 nucleotides
GFF4025 - Mercuric transport protein, MerT, at 232,696 to 233,037
GFF4025
GFF4026 - Periplasmic mercury(+2) binding protein, MerP, at 233,048 to 233,326
GFF4026
GFF4027 - hypothetical protein, at 233,323 to 233,553
GFF4027
GFF4028 - Cytochrome c, class I, at 233,719 to 235,668
GFF4028
GFF4029 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 235,798 to 238,728
GFF4029
Position (kb) 233
234
235
236 Strain fitness (log2 ratio) -1
0
1
2
3 at 233.242 kb on + strand, within GFF4026 at 233.425 kb on + strand, within GFF4027 at 233.426 kb on - strand, within GFF4027 at 233.426 kb on - strand, within GFF4027 at 233.426 kb on - strand, within GFF4027 at 233.568 kb on + strand at 233.568 kb on + strand at 233.715 kb on + strand at 233.715 kb on + strand at 233.716 kb on - strand at 233.716 kb on - strand at 233.822 kb on + strand at 233.822 kb on + strand at 233.823 kb on - strand at 233.834 kb on - strand at 233.845 kb on + strand at 233.845 kb on + strand at 233.914 kb on + strand, within GFF4028 at 233.986 kb on - strand, within GFF4028 at 234.083 kb on + strand, within GFF4028 at 234.113 kb on + strand, within GFF4028 at 234.192 kb on - strand, within GFF4028 at 234.320 kb on + strand, within GFF4028 at 234.383 kb on + strand, within GFF4028 at 234.383 kb on + strand, within GFF4028 at 234.383 kb on + strand, within GFF4028 at 234.384 kb on - strand, within GFF4028 at 234.384 kb on - strand, within GFF4028 at 234.384 kb on - strand, within GFF4028 at 234.551 kb on + strand, within GFF4028 at 234.701 kb on + strand, within GFF4028 at 234.702 kb on - strand, within GFF4028 at 234.702 kb on - strand, within GFF4028 at 234.709 kb on + strand, within GFF4028 at 235.100 kb on + strand, within GFF4028 at 235.100 kb on + strand, within GFF4028 at 235.100 kb on + strand, within GFF4028 at 235.252 kb on + strand, within GFF4028 at 235.252 kb on + strand, within GFF4028 at 235.252 kb on + strand, within GFF4028 at 235.253 kb on - strand, within GFF4028 at 235.290 kb on - strand, within GFF4028 at 235.532 kb on + strand at 235.533 kb on - strand at 235.640 kb on + strand at 235.640 kb on + strand at 235.640 kb on + strand at 235.641 kb on - strand at 235.641 kb on - strand at 235.674 kb on - strand at 235.932 kb on + strand at 235.932 kb on + strand at 235.964 kb on - strand at 236.101 kb on + strand, within GFF4029 at 236.101 kb on + strand, within GFF4029 at 236.382 kb on + strand, within GFF4029 at 236.496 kb on - strand, within GFF4029 at 236.498 kb on + strand, within GFF4029 at 236.498 kb on + strand, within GFF4029 at 236.498 kb on + strand, within GFF4029 at 236.498 kb on + strand, within GFF4029 at 236.498 kb on + strand, within GFF4029 at 236.499 kb on - strand, within GFF4029 at 236.499 kb on - strand, within GFF4029 at 236.499 kb on - strand, within GFF4029 at 236.499 kb on - strand, within GFF4029
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 233,242 + GFF4026 0.70 -0.8 233,425 + GFF4027 0.44 +0.6 233,426 - GFF4027 0.45 +0.4 233,426 - GFF4027 0.45 +0.6 233,426 - GFF4027 0.45 +0.4 233,568 + -1.2 233,568 + +0.2 233,715 + +0.1 233,715 + -0.2 233,716 - +1.0 233,716 - +0.5 233,822 + +1.4 233,822 + +0.2 233,823 - -0.1 233,834 - +0.9 233,845 + +1.8 233,845 + +0.1 233,914 + GFF4028 0.10 -0.3 233,986 - GFF4028 0.14 +0.8 234,083 + GFF4028 0.19 +0.0 234,113 + GFF4028 0.20 +0.7 234,192 - GFF4028 0.24 +0.1 234,320 + GFF4028 0.31 +0.1 234,383 + GFF4028 0.34 +0.1 234,383 + GFF4028 0.34 +0.1 234,383 + GFF4028 0.34 -0.5 234,384 - GFF4028 0.34 +0.2 234,384 - GFF4028 0.34 +0.1 234,384 - GFF4028 0.34 -0.3 234,551 + GFF4028 0.43 -0.2 234,701 + GFF4028 0.50 -0.3 234,702 - GFF4028 0.50 +0.3 234,702 - GFF4028 0.50 +3.7 234,709 + GFF4028 0.51 +1.8 235,100 + GFF4028 0.71 +0.5 235,100 + GFF4028 0.71 +1.2 235,100 + GFF4028 0.71 -0.0 235,252 + GFF4028 0.79 -0.3 235,252 + GFF4028 0.79 +1.8 235,252 + GFF4028 0.79 +0.9 235,253 - GFF4028 0.79 -0.4 235,290 - GFF4028 0.81 -0.2 235,532 + -0.1 235,533 - -0.3 235,640 + +0.8 235,640 + -0.4 235,640 + +1.8 235,641 - +2.2 235,641 - +0.3 235,674 - -0.1 235,932 + +0.7 235,932 + -0.4 235,964 - +0.2 236,101 + GFF4029 0.10 -0.3 236,101 + GFF4029 0.10 +0.4 236,382 + GFF4029 0.20 -1.4 236,496 - GFF4029 0.24 +0.3 236,498 + GFF4029 0.24 +0.1 236,498 + GFF4029 0.24 +0.2 236,498 + GFF4029 0.24 -0.2 236,498 + GFF4029 0.24 +0.2 236,498 + GFF4029 0.24 -0.4 236,499 - GFF4029 0.24 -0.7 236,499 - GFF4029 0.24 -0.6 236,499 - GFF4029 0.24 -0.3 236,499 - GFF4029 0.24 -0.5
Or see this region's nucleotide sequence