Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4016 and GFF4017 overlap by 8 nucleotides GFF4017 and GFF4018 overlap by 4 nucleotides GFF4018 and GFF4019 are separated by 4 nucleotides GFF4019 and GFF4020 overlap by 11 nucleotides GFF4020 and GFF4021 are separated by 16 nucleotides
GFF4016 - Arsenate reductase (EC 1.20.4.1), at 225,986 to 226,357
GFF4016
GFF4017 - Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family, at 226,350 to 226,859
GFF4017
GFF4018 - Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family, at 226,856 to 227,344
GFF4018
GFF4019 - Arsenical-resistance protein ACR3, at 227,349 to 228,407
GFF4019
GFF4020 - Arsenic resistance protein ArsH, at 228,397 to 229,110
GFF4020
GFF4021 - Uncharacterized MFS-type transporter, at 229,127 to 230,326
GFF4021
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 226.423 kb on + strand, within GFF4017 at 226.423 kb on + strand, within GFF4017 at 226.423 kb on + strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.459 kb on - strand, within GFF4017 at 226.459 kb on - strand, within GFF4017 at 226.497 kb on + strand, within GFF4017 at 226.497 kb on + strand, within GFF4017 at 226.498 kb on - strand, within GFF4017 at 226.716 kb on - strand, within GFF4017 at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 227.138 kb on + strand, within GFF4018 at 227.138 kb on + strand, within GFF4018 at 227.252 kb on + strand, within GFF4018 at 227.410 kb on - strand at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.946 kb on + strand, within GFF4019 at 227.947 kb on - strand, within GFF4019 at 227.947 kb on - strand, within GFF4019 at 228.396 kb on + strand at 228.397 kb on - strand at 228.397 kb on - strand at 228.505 kb on + strand, within GFF4020 at 228.505 kb on + strand, within GFF4020 at 228.529 kb on + strand, within GFF4020 at 228.962 kb on - strand, within GFF4020 at 228.964 kb on + strand, within GFF4020 at 228.965 kb on - strand, within GFF4020 at 228.965 kb on - strand, within GFF4020 at 229.049 kb on - strand at 229.049 kb on - strand at 229.049 kb on - strand at 229.193 kb on + strand at 229.193 kb on + strand at 229.193 kb on + strand at 229.194 kb on - strand at 229.194 kb on - strand at 229.194 kb on - strand at 229.194 kb on - strand at 229.196 kb on + strand at 229.196 kb on + strand at 229.196 kb on + strand at 229.196 kb on + strand at 229.197 kb on - strand at 229.352 kb on - strand, within GFF4021
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 226,423 + GFF4017 0.14 -0.1 226,423 + GFF4017 0.14 -1.0 226,423 + GFF4017 0.14 -0.1 226,424 - GFF4017 0.15 -0.7 226,424 - GFF4017 0.15 +0.1 226,424 - GFF4017 0.15 +0.3 226,458 + GFF4017 0.21 +0.3 226,458 + GFF4017 0.21 +0.0 226,458 + GFF4017 0.21 -0.0 226,458 + GFF4017 0.21 +0.2 226,458 + GFF4017 0.21 +1.6 226,459 - GFF4017 0.21 -1.4 226,459 - GFF4017 0.21 -0.5 226,497 + GFF4017 0.29 -0.2 226,497 + GFF4017 0.29 +0.5 226,498 - GFF4017 0.29 +1.1 226,716 - GFF4017 0.72 +0.5 226,869 + -0.2 226,869 + +0.7 226,869 + +0.2 226,869 + -0.5 226,869 + -0.5 226,869 + +0.8 226,869 + -0.1 226,869 + -0.4 226,870 - -0.4 226,870 - +0.0 226,870 - +0.6 226,870 - -0.5 226,870 - -0.6 227,138 + GFF4018 0.58 -0.3 227,138 + GFF4018 0.58 -0.5 227,252 + GFF4018 0.81 +2.2 227,410 - +0.1 227,730 + GFF4019 0.36 +0.3 227,730 + GFF4019 0.36 +0.2 227,730 + GFF4019 0.36 +0.4 227,730 + GFF4019 0.36 -0.5 227,730 + GFF4019 0.36 +0.0 227,730 + GFF4019 0.36 +0.5 227,946 + GFF4019 0.56 -0.1 227,947 - GFF4019 0.56 +0.3 227,947 - GFF4019 0.56 -0.8 228,396 + +0.3 228,397 - -1.5 228,397 - -0.2 228,505 + GFF4020 0.15 +0.0 228,505 + GFF4020 0.15 +0.2 228,529 + GFF4020 0.18 -0.2 228,962 - GFF4020 0.79 -1.1 228,964 + GFF4020 0.79 -0.8 228,965 - GFF4020 0.80 -0.5 228,965 - GFF4020 0.80 +0.4 229,049 - -0.5 229,049 - +0.6 229,049 - +0.8 229,193 + +0.2 229,193 + +3.4 229,193 + -0.0 229,194 - -0.0 229,194 - -0.1 229,194 - +0.2 229,194 - -0.1 229,196 + -0.8 229,196 + -1.8 229,196 + +0.3 229,196 + +0.6 229,197 - +2.9 229,352 - GFF4021 0.19 -0.8
Or see this region's nucleotide sequence