Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4008 and GFF4009 are separated by 763 nucleotides GFF4009 and GFF4010 are separated by 214 nucleotides
GFF4008 - Transcriptional regulator, LysR family, at 215,251 to 216,153
GFF4008
GFF4009 - D-amino acid dehydrogenase (EC 1.4.99.6), at 216,917 to 218,128
GFF4009
GFF4010 - no description, at 218,343 to 219,683
GFF4010
Position (kb) 216
217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2 at 215.935 kb on + strand, within GFF4008 at 215.936 kb on - strand, within GFF4008 at 215.936 kb on - strand, within GFF4008 at 216.149 kb on + strand at 216.149 kb on + strand at 216.149 kb on + strand at 216.149 kb on + strand at 216.149 kb on + strand at 216.150 kb on - strand at 216.150 kb on - strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.212 kb on - strand at 216.212 kb on - strand at 216.280 kb on + strand at 216.280 kb on + strand at 216.280 kb on + strand at 216.281 kb on - strand at 216.281 kb on - strand at 216.281 kb on - strand at 216.286 kb on + strand at 216.440 kb on - strand at 216.479 kb on + strand at 216.479 kb on + strand at 216.625 kb on + strand at 216.625 kb on + strand at 216.626 kb on - strand at 216.815 kb on - strand at 216.815 kb on - strand at 216.815 kb on - strand at 216.815 kb on - strand at 217.305 kb on + strand, within GFF4009 at 217.305 kb on + strand, within GFF4009 at 217.305 kb on + strand, within GFF4009 at 217.306 kb on - strand, within GFF4009 at 217.321 kb on - strand, within GFF4009 at 217.332 kb on + strand, within GFF4009 at 217.333 kb on - strand, within GFF4009 at 217.560 kb on + strand, within GFF4009 at 217.561 kb on - strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.981 kb on - strand, within GFF4009 at 217.981 kb on - strand, within GFF4009 at 217.981 kb on - strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 218.186 kb on + strand at 218.187 kb on - strand at 218.187 kb on - strand at 218.187 kb on - strand at 218.212 kb on + strand at 218.213 kb on - strand at 218.213 kb on - strand at 218.235 kb on + strand at 218.236 kb on - strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.263 kb on + strand at 218.263 kb on + strand at 218.263 kb on + strand at 218.263 kb on + strand at 218.264 kb on - strand at 218.264 kb on - strand at 218.264 kb on - strand at 218.264 kb on - strand at 218.270 kb on + strand at 218.270 kb on + strand at 218.344 kb on + strand at 218.344 kb on + strand at 218.344 kb on + strand at 218.345 kb on - strand at 218.345 kb on - strand at 218.345 kb on - strand at 218.345 kb on - strand at 218.345 kb on - strand at 218.466 kb on - strand at 218.466 kb on - strand at 218.682 kb on + strand, within GFF4010 at 218.682 kb on + strand, within GFF4010 at 218.683 kb on - strand, within GFF4010 at 218.683 kb on - strand, within GFF4010 at 218.735 kb on + strand, within GFF4010 at 218.736 kb on - strand, within GFF4010 at 218.736 kb on - strand, within GFF4010 at 218.958 kb on + strand, within GFF4010 at 218.959 kb on - strand, within GFF4010 at 218.959 kb on - strand, within GFF4010 at 218.959 kb on - strand, within GFF4010
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 215,935 + GFF4008 0.76 -0.1 215,936 - GFF4008 0.76 -1.5 215,936 - GFF4008 0.76 +0.7 216,149 + +0.2 216,149 + +0.5 216,149 + +0.8 216,149 + +2.5 216,149 + -0.5 216,150 - -1.2 216,150 - -1.5 216,151 + +0.3 216,151 + +0.8 216,151 + +0.2 216,151 + +0.0 216,151 + +0.8 216,151 + -1.6 216,152 - +0.2 216,152 - +1.1 216,152 - -0.3 216,152 - -1.2 216,152 - +0.5 216,152 - -0.2 216,152 - -0.2 216,152 - -0.3 216,152 - -0.3 216,152 - +0.5 216,152 - -0.6 216,152 - -1.5 216,212 - +0.4 216,212 - -0.4 216,280 + +0.6 216,280 + -2.1 216,280 + -0.0 216,281 - +0.7 216,281 - -0.5 216,281 - +0.4 216,286 + -0.1 216,440 - -1.8 216,479 + -0.3 216,479 + -0.7 216,625 + +0.3 216,625 + +0.8 216,626 - -1.2 216,815 - -0.3 216,815 - +1.2 216,815 - +0.6 216,815 - +1.8 217,305 + GFF4009 0.32 -0.1 217,305 + GFF4009 0.32 -0.5 217,305 + GFF4009 0.32 +0.8 217,306 - GFF4009 0.32 -1.4 217,321 - GFF4009 0.33 -0.1 217,332 + GFF4009 0.34 +0.5 217,333 - GFF4009 0.34 -0.7 217,560 + GFF4009 0.53 +0.8 217,561 - GFF4009 0.53 +0.5 217,710 + GFF4009 0.65 +0.4 217,710 + GFF4009 0.65 +0.2 217,710 + GFF4009 0.65 +0.3 217,710 + GFF4009 0.65 +1.5 217,710 + GFF4009 0.65 -0.6 217,710 + GFF4009 0.65 +0.6 217,710 + GFF4009 0.65 -0.3 217,710 + GFF4009 0.65 +0.2 217,711 - GFF4009 0.66 +0.4 217,711 - GFF4009 0.66 +2.4 217,711 - GFF4009 0.66 +0.2 217,711 - GFF4009 0.66 -0.5 217,711 - GFF4009 0.66 -0.8 217,711 - GFF4009 0.66 +0.8 217,711 - GFF4009 0.66 +0.5 217,711 - GFF4009 0.66 -0.8 217,711 - GFF4009 0.66 +0.0 217,980 + GFF4009 0.88 +1.2 217,980 + GFF4009 0.88 +0.3 217,980 + GFF4009 0.88 +0.2 217,980 + GFF4009 0.88 -0.1 217,980 + GFF4009 0.88 -0.4 217,980 + GFF4009 0.88 +0.4 217,980 + GFF4009 0.88 -0.8 217,980 + GFF4009 0.88 +0.7 217,981 - GFF4009 0.88 +0.1 217,981 - GFF4009 0.88 +0.8 217,981 - GFF4009 0.88 +0.5 217,986 + GFF4009 0.88 -0.1 217,986 + GFF4009 0.88 +0.5 217,986 + GFF4009 0.88 +1.6 217,986 + GFF4009 0.88 -0.0 217,986 + GFF4009 0.88 +0.3 217,986 + GFF4009 0.88 -1.7 217,987 - GFF4009 0.88 +0.0 217,987 - GFF4009 0.88 -0.8 217,987 - GFF4009 0.88 -0.3 217,987 - GFF4009 0.88 +0.2 217,987 - GFF4009 0.88 +0.7 217,987 - GFF4009 0.88 -0.8 217,987 - GFF4009 0.88 +0.8 217,987 - GFF4009 0.88 -0.8 217,987 - GFF4009 0.88 +0.9 217,987 - GFF4009 0.88 -0.7 218,186 + +0.2 218,187 - +0.1 218,187 - +0.6 218,187 - -0.1 218,212 + +1.5 218,213 - +0.0 218,213 - +0.3 218,235 + +0.8 218,236 - +0.2 218,244 + -0.1 218,244 + -0.4 218,244 + +0.9 218,244 + +1.4 218,244 + +0.2 218,244 + -2.1 218,244 + -0.5 218,244 + +0.7 218,245 - +0.9 218,245 - +0.1 218,245 - -1.4 218,245 - -0.5 218,245 - -0.2 218,245 - +0.3 218,245 - +1.2 218,245 - -0.5 218,245 - -1.0 218,245 - +0.0 218,263 + -0.5 218,263 + -0.0 218,263 + -0.3 218,263 + +0.7 218,264 - +0.4 218,264 - +0.0 218,264 - -0.0 218,264 - -0.1 218,270 + +0.2 218,270 + -0.1 218,344 + +0.6 218,344 + +0.3 218,344 + +0.3 218,345 - +0.6 218,345 - -1.3 218,345 - -0.3 218,345 - -0.3 218,345 - -0.6 218,466 - -0.3 218,466 - -1.2 218,682 + GFF4010 0.25 -0.2 218,682 + GFF4010 0.25 +0.7 218,683 - GFF4010 0.25 +0.3 218,683 - GFF4010 0.25 +0.4 218,735 + GFF4010 0.29 -1.2 218,736 - GFF4010 0.29 -1.4 218,736 - GFF4010 0.29 +1.0 218,958 + GFF4010 0.46 -0.2 218,959 - GFF4010 0.46 -0.1 218,959 - GFF4010 0.46 -0.8 218,959 - GFF4010 0.46 -0.0
Or see this region's nucleotide sequence