Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4007 and GFF4008 are separated by 20 nucleotides GFF4008 and GFF4009 are separated by 763 nucleotides
GFF4007 - Glutamate carboxypeptidase (EC 3.4.17.11), at 213,932 to 215,230
GFF4007
GFF4008 - Transcriptional regulator, LysR family, at 215,251 to 216,153
GFF4008
GFF4009 - D-amino acid dehydrogenase (EC 1.4.99.6), at 216,917 to 218,128
GFF4009
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.307 kb on + strand, within GFF4007 at 214.307 kb on + strand, within GFF4007 at 214.307 kb on + strand, within GFF4007 at 214.307 kb on + strand, within GFF4007 at 214.307 kb on + strand, within GFF4007 at 214.308 kb on - strand, within GFF4007 at 214.308 kb on - strand, within GFF4007 at 214.308 kb on - strand, within GFF4007 at 214.308 kb on - strand, within GFF4007 at 214.308 kb on - strand, within GFF4007 at 214.308 kb on - strand, within GFF4007 at 214.308 kb on - strand, within GFF4007 at 214.362 kb on - strand, within GFF4007 at 214.362 kb on - strand, within GFF4007 at 214.362 kb on - strand, within GFF4007 at 214.449 kb on - strand, within GFF4007 at 214.449 kb on - strand, within GFF4007 at 214.565 kb on + strand, within GFF4007 at 214.565 kb on + strand, within GFF4007 at 214.565 kb on + strand, within GFF4007 at 214.566 kb on - strand, within GFF4007 at 214.566 kb on - strand, within GFF4007 at 214.566 kb on - strand, within GFF4007 at 214.566 kb on - strand, within GFF4007 at 214.566 kb on - strand, within GFF4007 at 214.683 kb on - strand, within GFF4007 at 214.683 kb on - strand, within GFF4007 at 214.683 kb on - strand, within GFF4007 at 214.841 kb on + strand, within GFF4007 at 214.842 kb on - strand, within GFF4007 at 214.842 kb on - strand, within GFF4007 at 214.988 kb on + strand, within GFF4007 at 214.988 kb on + strand, within GFF4007 at 214.989 kb on - strand, within GFF4007 at 214.989 kb on - strand, within GFF4007 at 214.989 kb on - strand, within GFF4007 at 214.989 kb on - strand, within GFF4007 at 214.989 kb on - strand, within GFF4007 at 214.989 kb on - strand, within GFF4007 at 215.138 kb on + strand at 215.138 kb on + strand at 215.138 kb on + strand at 215.138 kb on + strand at 215.139 kb on - strand at 215.139 kb on - strand at 215.172 kb on - strand at 215.560 kb on + strand, within GFF4008 at 215.560 kb on + strand, within GFF4008 at 215.560 kb on + strand, within GFF4008 at 215.560 kb on + strand, within GFF4008 at 215.560 kb on + strand, within GFF4008 at 215.560 kb on + strand, within GFF4008 at 215.560 kb on + strand, within GFF4008 at 215.560 kb on + strand, within GFF4008 at 215.561 kb on - strand, within GFF4008 at 215.561 kb on - strand, within GFF4008 at 215.561 kb on - strand, within GFF4008 at 215.603 kb on - strand, within GFF4008 at 215.935 kb on + strand, within GFF4008 at 215.936 kb on - strand, within GFF4008 at 215.936 kb on - strand, within GFF4008 at 216.149 kb on + strand at 216.149 kb on + strand at 216.149 kb on + strand at 216.149 kb on + strand at 216.149 kb on + strand at 216.150 kb on - strand at 216.150 kb on - strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.151 kb on + strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.152 kb on - strand at 216.212 kb on - strand at 216.212 kb on - strand at 216.280 kb on + strand at 216.280 kb on + strand at 216.280 kb on + strand at 216.281 kb on - strand at 216.281 kb on - strand at 216.281 kb on - strand at 216.286 kb on + strand at 216.440 kb on - strand at 216.479 kb on + strand at 216.479 kb on + strand at 216.625 kb on + strand at 216.625 kb on + strand at 216.626 kb on - strand at 216.815 kb on - strand at 216.815 kb on - strand at 216.815 kb on - strand at 216.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 214,307 + GFF4007 0.29 +0.3 214,307 + GFF4007 0.29 -0.7 214,307 + GFF4007 0.29 +0.8 214,307 + GFF4007 0.29 -0.5 214,307 + GFF4007 0.29 +1.0 214,308 - GFF4007 0.29 -1.0 214,308 - GFF4007 0.29 -0.2 214,308 - GFF4007 0.29 +1.6 214,308 - GFF4007 0.29 +0.2 214,308 - GFF4007 0.29 -0.2 214,308 - GFF4007 0.29 +0.7 214,308 - GFF4007 0.29 +0.1 214,362 - GFF4007 0.33 +0.8 214,362 - GFF4007 0.33 +0.6 214,362 - GFF4007 0.33 -0.0 214,449 - GFF4007 0.40 -0.1 214,449 - GFF4007 0.40 -0.5 214,565 + GFF4007 0.49 +0.2 214,565 + GFF4007 0.49 -0.8 214,565 + GFF4007 0.49 +0.5 214,566 - GFF4007 0.49 -0.8 214,566 - GFF4007 0.49 -0.3 214,566 - GFF4007 0.49 +0.1 214,566 - GFF4007 0.49 -0.3 214,566 - GFF4007 0.49 +0.1 214,683 - GFF4007 0.58 -0.2 214,683 - GFF4007 0.58 -1.2 214,683 - GFF4007 0.58 +1.6 214,841 + GFF4007 0.70 -0.8 214,842 - GFF4007 0.70 -0.3 214,842 - GFF4007 0.70 +0.2 214,988 + GFF4007 0.81 +0.2 214,988 + GFF4007 0.81 +0.9 214,989 - GFF4007 0.81 +0.2 214,989 - GFF4007 0.81 +0.3 214,989 - GFF4007 0.81 -0.0 214,989 - GFF4007 0.81 +0.9 214,989 - GFF4007 0.81 +0.7 214,989 - GFF4007 0.81 +0.9 215,138 + -1.2 215,138 + -0.4 215,138 + -0.4 215,138 + -0.4 215,139 - +1.1 215,139 - +1.2 215,172 - +0.1 215,560 + GFF4008 0.34 -0.3 215,560 + GFF4008 0.34 +0.4 215,560 + GFF4008 0.34 +0.5 215,560 + GFF4008 0.34 -0.1 215,560 + GFF4008 0.34 +0.1 215,560 + GFF4008 0.34 +0.1 215,560 + GFF4008 0.34 +0.7 215,560 + GFF4008 0.34 +0.2 215,561 - GFF4008 0.34 +0.2 215,561 - GFF4008 0.34 +1.4 215,561 - GFF4008 0.34 +0.1 215,603 - GFF4008 0.39 +0.6 215,935 + GFF4008 0.76 -0.1 215,936 - GFF4008 0.76 -1.5 215,936 - GFF4008 0.76 +0.7 216,149 + +0.2 216,149 + +0.5 216,149 + +0.8 216,149 + +2.5 216,149 + -0.5 216,150 - -1.2 216,150 - -1.5 216,151 + +0.3 216,151 + +0.8 216,151 + +0.2 216,151 + +0.0 216,151 + +0.8 216,151 + -1.6 216,152 - +0.2 216,152 - +1.1 216,152 - -0.3 216,152 - -1.2 216,152 - +0.5 216,152 - -0.2 216,152 - -0.2 216,152 - -0.3 216,152 - -0.3 216,152 - +0.5 216,152 - -0.6 216,152 - -1.5 216,212 - +0.4 216,212 - -0.4 216,280 + +0.6 216,280 + -2.1 216,280 + -0.0 216,281 - +0.7 216,281 - -0.5 216,281 - +0.4 216,286 + -0.1 216,440 - -1.8 216,479 + -0.3 216,479 + -0.7 216,625 + +0.3 216,625 + +0.8 216,626 - -1.2 216,815 - -0.3 216,815 - +1.2 216,815 - +0.6 216,815 - +1.8
Or see this region's nucleotide sequence