Strain Fitness in Variovorax sp. SCN45 around GFF4007

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4006 and GFF4007 are separated by 40 nucleotidesGFF4007 and GFF4008 are separated by 20 nucleotides GFF4006 - DNA polymerase I (EC 2.7.7.7), at 211,075 to 213,891 GFF4006 GFF4007 - Glutamate carboxypeptidase (EC 3.4.17.11), at 213,932 to 215,230 GFF4007 GFF4008 - Transcriptional regulator, LysR family, at 215,251 to 216,153 GFF4008 Position (kb) 213 214 215 216Strain fitness (log2 ratio) -1 0 1 2at 213.012 kb on + strand, within GFF4006at 213.022 kb on + strand, within GFF4006at 213.022 kb on + strand, within GFF4006at 213.022 kb on + strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.079 kb on + strand, within GFF4006at 213.079 kb on + strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.400 kb on + strand, within GFF4006at 213.463 kb on + strand, within GFF4006at 213.463 kb on + strand, within GFF4006at 213.464 kb on - strand, within GFF4006at 213.464 kb on - strand, within GFF4006at 213.505 kb on + strand, within GFF4006at 213.505 kb on + strand, within GFF4006at 213.505 kb on + strand, within GFF4006at 213.505 kb on + strand, within GFF4006at 213.544 kb on + strand, within GFF4006at 213.544 kb on + strand, within GFF4006at 213.574 kb on + strand, within GFF4006at 213.692 kb on + strandat 213.693 kb on - strandat 213.693 kb on - strandat 213.693 kb on - strandat 213.693 kb on - strandat 213.693 kb on - strandat 213.693 kb on - strandat 214.202 kb on + strand, within GFF4007at 214.202 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.362 kb on - strand, within GFF4007at 214.362 kb on - strand, within GFF4007at 214.362 kb on - strand, within GFF4007at 214.449 kb on - strand, within GFF4007at 214.449 kb on - strand, within GFF4007at 214.565 kb on + strand, within GFF4007at 214.565 kb on + strand, within GFF4007at 214.565 kb on + strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.683 kb on - strand, within GFF4007at 214.683 kb on - strand, within GFF4007at 214.683 kb on - strand, within GFF4007at 214.841 kb on + strand, within GFF4007at 214.842 kb on - strand, within GFF4007at 214.842 kb on - strand, within GFF4007at 214.988 kb on + strand, within GFF4007at 214.988 kb on + strand, within GFF4007at 214.989 kb on - strand, within GFF4007at 214.989 kb on - strand, within GFF4007at 214.989 kb on - strand, within GFF4007at 214.989 kb on - strand, within GFF4007at 214.989 kb on - strand, within GFF4007at 214.989 kb on - strand, within GFF4007at 215.138 kb on + strandat 215.138 kb on + strandat 215.138 kb on + strandat 215.138 kb on + strandat 215.139 kb on - strandat 215.139 kb on - strandat 215.172 kb on - strandat 215.560 kb on + strand, within GFF4008at 215.560 kb on + strand, within GFF4008at 215.560 kb on + strand, within GFF4008at 215.560 kb on + strand, within GFF4008at 215.560 kb on + strand, within GFF4008at 215.560 kb on + strand, within GFF4008at 215.560 kb on + strand, within GFF4008at 215.560 kb on + strand, within GFF4008at 215.561 kb on - strand, within GFF4008at 215.561 kb on - strand, within GFF4008at 215.561 kb on - strand, within GFF4008at 215.603 kb on - strand, within GFF4008at 215.935 kb on + strand, within GFF4008at 215.936 kb on - strand, within GFF4008at 215.936 kb on - strand, within GFF4008at 216.149 kb on + strandat 216.149 kb on + strandat 216.149 kb on + strandat 216.149 kb on + strandat 216.149 kb on + strandat 216.150 kb on - strandat 216.150 kb on - strandat 216.151 kb on + strandat 216.151 kb on + strandat 216.151 kb on + strandat 216.151 kb on + strandat 216.151 kb on + strandat 216.151 kb on + strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.152 kb on - strandat 216.212 kb on - strandat 216.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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213,012 + GFF4006 0.69 -1.4
213,022 + GFF4006 0.69 +1.2
213,022 + GFF4006 0.69 -0.3
213,022 + GFF4006 0.69 -0.9
213,023 - GFF4006 0.69 -0.3
213,023 - GFF4006 0.69 -0.3
213,023 - GFF4006 0.69 +1.5
213,023 - GFF4006 0.69 -0.7
213,023 - GFF4006 0.69 -1.0
213,079 + GFF4006 0.71 -0.0
213,079 + GFF4006 0.71 -1.2
213,080 - GFF4006 0.71 -1.7
213,080 - GFF4006 0.71 -1.0
213,080 - GFF4006 0.71 -0.7
213,080 - GFF4006 0.71 -0.8
213,080 - GFF4006 0.71 -1.5
213,080 - GFF4006 0.71 -0.5
213,400 + GFF4006 0.83 -1.7
213,463 + GFF4006 0.85 +0.8
213,463 + GFF4006 0.85 -0.9
213,464 - GFF4006 0.85 -0.1
213,464 - GFF4006 0.85 -0.9
213,505 + GFF4006 0.86 -1.4
213,505 + GFF4006 0.86 -0.7
213,505 + GFF4006 0.86 +0.2
213,505 + GFF4006 0.86 +0.8
213,544 + GFF4006 0.88 +0.2
213,544 + GFF4006 0.88 -0.9
213,574 + GFF4006 0.89 -1.4
213,692 + +0.3
213,693 - -0.4
213,693 - -0.8
213,693 - -0.7
213,693 - +1.6
213,693 - +0.2
213,693 - +0.4
214,202 + GFF4007 0.21 -0.5
214,202 + GFF4007 0.21 -0.0
214,307 + GFF4007 0.29 +0.3
214,307 + GFF4007 0.29 -0.7
214,307 + GFF4007 0.29 +0.8
214,307 + GFF4007 0.29 -0.5
214,307 + GFF4007 0.29 +1.0
214,308 - GFF4007 0.29 -1.0
214,308 - GFF4007 0.29 -0.2
214,308 - GFF4007 0.29 +1.6
214,308 - GFF4007 0.29 +0.2
214,308 - GFF4007 0.29 -0.2
214,308 - GFF4007 0.29 +0.7
214,308 - GFF4007 0.29 +0.1
214,362 - GFF4007 0.33 +0.8
214,362 - GFF4007 0.33 +0.6
214,362 - GFF4007 0.33 -0.0
214,449 - GFF4007 0.40 -0.1
214,449 - GFF4007 0.40 -0.5
214,565 + GFF4007 0.49 +0.2
214,565 + GFF4007 0.49 -0.8
214,565 + GFF4007 0.49 +0.5
214,566 - GFF4007 0.49 -0.8
214,566 - GFF4007 0.49 -0.3
214,566 - GFF4007 0.49 +0.1
214,566 - GFF4007 0.49 -0.3
214,566 - GFF4007 0.49 +0.1
214,683 - GFF4007 0.58 -0.2
214,683 - GFF4007 0.58 -1.2
214,683 - GFF4007 0.58 +1.6
214,841 + GFF4007 0.70 -0.8
214,842 - GFF4007 0.70 -0.3
214,842 - GFF4007 0.70 +0.2
214,988 + GFF4007 0.81 +0.2
214,988 + GFF4007 0.81 +0.9
214,989 - GFF4007 0.81 +0.2
214,989 - GFF4007 0.81 +0.3
214,989 - GFF4007 0.81 -0.0
214,989 - GFF4007 0.81 +0.9
214,989 - GFF4007 0.81 +0.7
214,989 - GFF4007 0.81 +0.9
215,138 + -1.2
215,138 + -0.4
215,138 + -0.4
215,138 + -0.4
215,139 - +1.1
215,139 - +1.2
215,172 - +0.1
215,560 + GFF4008 0.34 -0.3
215,560 + GFF4008 0.34 +0.4
215,560 + GFF4008 0.34 +0.5
215,560 + GFF4008 0.34 -0.1
215,560 + GFF4008 0.34 +0.1
215,560 + GFF4008 0.34 +0.1
215,560 + GFF4008 0.34 +0.7
215,560 + GFF4008 0.34 +0.2
215,561 - GFF4008 0.34 +0.2
215,561 - GFF4008 0.34 +1.4
215,561 - GFF4008 0.34 +0.1
215,603 - GFF4008 0.39 +0.6
215,935 + GFF4008 0.76 -0.1
215,936 - GFF4008 0.76 -1.5
215,936 - GFF4008 0.76 +0.7
216,149 + +0.2
216,149 + +0.5
216,149 + +0.8
216,149 + +2.5
216,149 + -0.5
216,150 - -1.2
216,150 - -1.5
216,151 + +0.3
216,151 + +0.8
216,151 + +0.2
216,151 + +0.0
216,151 + +0.8
216,151 + -1.6
216,152 - +0.2
216,152 - +1.1
216,152 - -0.3
216,152 - -1.2
216,152 - +0.5
216,152 - -0.2
216,152 - -0.2
216,152 - -0.3
216,152 - -0.3
216,152 - +0.5
216,152 - -0.6
216,152 - -1.5
216,212 - +0.4
216,212 - -0.4

Or see this region's nucleotide sequence