Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3978 and GFF3979 are separated by 28 nucleotides GFF3979 and GFF3980 overlap by 4 nucleotides GFF3980 and GFF3981 are separated by 43 nucleotides
GFF3978 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 181,348 to 182,493
GFF3978
GFF3979 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 182,522 to 183,847
GFF3979
GFF3980 - 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-), at 183,844 to 184,308
GFF3980
GFF3981 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 184,352 to 185,515
GFF3981
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 181.859 kb on + strand, within GFF3978 at 181.859 kb on + strand, within GFF3978 at 181.860 kb on - strand, within GFF3978 at 181.860 kb on - strand, within GFF3978 at 181.864 kb on + strand, within GFF3978 at 182.029 kb on + strand, within GFF3978 at 182.030 kb on - strand, within GFF3978 at 182.030 kb on - strand, within GFF3978 at 182.053 kb on + strand, within GFF3978 at 182.054 kb on - strand, within GFF3978 at 182.069 kb on - strand, within GFF3978 at 182.272 kb on + strand, within GFF3978 at 182.272 kb on + strand, within GFF3978 at 182.273 kb on - strand, within GFF3978 at 182.281 kb on + strand, within GFF3978 at 182.401 kb on + strand at 182.484 kb on - strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.858 kb on + strand, within GFF3979 at 183.026 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.141 kb on - strand, within GFF3979 at 183.264 kb on + strand, within GFF3979 at 183.265 kb on - strand, within GFF3979 at 183.369 kb on - strand, within GFF3979 at 183.386 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.583 kb on - strand, within GFF3979 at 183.714 kb on + strand, within GFF3979 at 183.714 kb on + strand, within GFF3979 at 183.941 kb on - strand, within GFF3980 at 184.156 kb on + strand, within GFF3980 at 184.347 kb on - strand at 184.526 kb on + strand, within GFF3981 at 184.527 kb on - strand, within GFF3981 at 184.844 kb on + strand, within GFF3981 at 184.844 kb on + strand, within GFF3981
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 181,859 + GFF3978 0.45 -0.4 181,859 + GFF3978 0.45 +1.5 181,860 - GFF3978 0.45 -2.2 181,860 - GFF3978 0.45 -0.2 181,864 + GFF3978 0.45 -1.4 182,029 + GFF3978 0.59 -0.4 182,030 - GFF3978 0.60 -0.6 182,030 - GFF3978 0.60 +1.0 182,053 + GFF3978 0.62 -0.2 182,054 - GFF3978 0.62 +0.2 182,069 - GFF3978 0.63 +0.3 182,272 + GFF3978 0.81 -0.0 182,272 + GFF3978 0.81 -0.2 182,273 - GFF3978 0.81 +3.6 182,281 + GFF3978 0.81 -0.8 182,401 + +0.1 182,484 - +0.0 182,531 + +1.8 182,531 + -1.5 182,531 + -0.2 182,858 + GFF3979 0.25 +0.6 183,026 + GFF3979 0.38 -0.3 183,140 + GFF3979 0.47 -0.1 183,140 + GFF3979 0.47 -1.2 183,141 - GFF3979 0.47 -0.4 183,264 + GFF3979 0.56 -1.4 183,265 - GFF3979 0.56 -0.1 183,369 - GFF3979 0.64 +0.0 183,386 + GFF3979 0.65 +0.3 183,435 + GFF3979 0.69 +0.7 183,435 + GFF3979 0.69 +0.3 183,583 - GFF3979 0.80 +0.3 183,714 + GFF3979 0.90 -0.4 183,714 + GFF3979 0.90 +0.4 183,941 - GFF3980 0.21 +0.5 184,156 + GFF3980 0.67 -0.4 184,347 - -1.2 184,526 + GFF3981 0.15 -0.4 184,527 - GFF3981 0.15 -0.9 184,844 + GFF3981 0.42 +0.9 184,844 + GFF3981 0.42 +0.8
Or see this region's nucleotide sequence