Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3962 and GFF3963 overlap by 11 nucleotides GFF3963 and GFF3964 overlap by 4 nucleotides GFF3964 and GFF3965 overlap by 4 nucleotides
GFF3962 - Opine dehydrogenase (EC 1.5.1.28), at 163,561 to 164,634
GFF3962
GFF3963 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 164,624 to 165,628
GFF3963
GFF3964 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 165,625 to 166,428
GFF3964
GFF3965 - Alcohol dehydrogenase, zinc-binding, at 166,425 to 167,309
GFF3965
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 163.844 kb on + strand, within GFF3962 at 163.844 kb on + strand, within GFF3962 at 163.845 kb on - strand, within GFF3962 at 163.845 kb on - strand, within GFF3962 at 163.845 kb on - strand, within GFF3962 at 163.891 kb on + strand, within GFF3962 at 163.891 kb on + strand, within GFF3962 at 163.891 kb on + strand, within GFF3962 at 163.891 kb on + strand, within GFF3962 at 163.892 kb on - strand, within GFF3962 at 163.892 kb on - strand, within GFF3962 at 163.892 kb on - strand, within GFF3962 at 163.892 kb on - strand, within GFF3962 at 163.892 kb on - strand, within GFF3962 at 163.966 kb on + strand, within GFF3962 at 163.966 kb on + strand, within GFF3962 at 163.967 kb on - strand, within GFF3962 at 164.039 kb on - strand, within GFF3962 at 164.086 kb on + strand, within GFF3962 at 164.087 kb on - strand, within GFF3962 at 164.087 kb on - strand, within GFF3962 at 164.311 kb on + strand, within GFF3962 at 164.312 kb on - strand, within GFF3962 at 164.329 kb on + strand, within GFF3962 at 164.329 kb on + strand, within GFF3962 at 164.329 kb on + strand, within GFF3962 at 164.329 kb on + strand, within GFF3962 at 164.330 kb on - strand, within GFF3962 at 164.330 kb on - strand, within GFF3962 at 164.330 kb on - strand, within GFF3962 at 164.330 kb on - strand, within GFF3962 at 164.350 kb on + strand, within GFF3962 at 164.350 kb on + strand, within GFF3962 at 164.350 kb on + strand, within GFF3962 at 164.351 kb on - strand, within GFF3962 at 164.351 kb on - strand, within GFF3962 at 164.351 kb on - strand, within GFF3962 at 164.422 kb on + strand, within GFF3962 at 164.422 kb on + strand, within GFF3962 at 164.423 kb on - strand, within GFF3962 at 164.423 kb on - strand, within GFF3962 at 164.423 kb on - strand, within GFF3962 at 164.423 kb on - strand, within GFF3962 at 164.705 kb on + strand at 164.793 kb on + strand, within GFF3963 at 165.102 kb on - strand, within GFF3963 at 165.102 kb on - strand, within GFF3963 at 165.440 kb on + strand, within GFF3963 at 165.512 kb on + strand, within GFF3963 at 165.512 kb on + strand, within GFF3963 at 165.513 kb on - strand, within GFF3963 at 165.519 kb on - strand, within GFF3963 at 165.676 kb on + strand at 165.676 kb on + strand at 165.749 kb on - strand, within GFF3964 at 165.749 kb on - strand, within GFF3964 at 165.912 kb on - strand, within GFF3964 at 165.912 kb on - strand, within GFF3964 at 165.912 kb on - strand, within GFF3964 at 166.003 kb on + strand, within GFF3964 at 166.003 kb on + strand, within GFF3964 at 166.003 kb on + strand, within GFF3964 at 166.004 kb on - strand, within GFF3964 at 166.594 kb on - strand, within GFF3965
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 163,844 + GFF3962 0.26 +0.1 163,844 + GFF3962 0.26 +0.6 163,845 - GFF3962 0.26 +0.4 163,845 - GFF3962 0.26 -1.8 163,845 - GFF3962 0.26 -0.6 163,891 + GFF3962 0.31 -0.0 163,891 + GFF3962 0.31 -1.0 163,891 + GFF3962 0.31 -0.4 163,891 + GFF3962 0.31 -0.1 163,892 - GFF3962 0.31 +0.5 163,892 - GFF3962 0.31 -0.4 163,892 - GFF3962 0.31 -0.7 163,892 - GFF3962 0.31 -0.4 163,892 - GFF3962 0.31 +0.2 163,966 + GFF3962 0.38 -0.8 163,966 + GFF3962 0.38 -0.4 163,967 - GFF3962 0.38 -1.2 164,039 - GFF3962 0.45 -1.2 164,086 + GFF3962 0.49 +0.6 164,087 - GFF3962 0.49 +0.3 164,087 - GFF3962 0.49 +0.3 164,311 + GFF3962 0.70 -1.1 164,312 - GFF3962 0.70 -0.8 164,329 + GFF3962 0.72 -0.2 164,329 + GFF3962 0.72 -0.8 164,329 + GFF3962 0.72 -1.5 164,329 + GFF3962 0.72 -0.8 164,330 - GFF3962 0.72 +0.4 164,330 - GFF3962 0.72 +0.2 164,330 - GFF3962 0.72 -0.0 164,330 - GFF3962 0.72 -0.5 164,350 + GFF3962 0.73 +1.5 164,350 + GFF3962 0.73 +1.0 164,350 + GFF3962 0.73 +0.3 164,351 - GFF3962 0.74 +2.8 164,351 - GFF3962 0.74 +0.0 164,351 - GFF3962 0.74 +0.0 164,422 + GFF3962 0.80 -0.4 164,422 + GFF3962 0.80 +0.6 164,423 - GFF3962 0.80 -0.5 164,423 - GFF3962 0.80 +0.8 164,423 - GFF3962 0.80 +0.2 164,423 - GFF3962 0.80 -0.6 164,705 + +0.5 164,793 + GFF3963 0.17 -1.0 165,102 - GFF3963 0.48 -0.3 165,102 - GFF3963 0.48 +0.7 165,440 + GFF3963 0.81 +1.0 165,512 + GFF3963 0.88 -1.2 165,512 + GFF3963 0.88 +0.9 165,513 - GFF3963 0.88 +0.4 165,519 - GFF3963 0.89 +1.2 165,676 + -0.5 165,676 + -1.2 165,749 - GFF3964 0.15 -0.7 165,749 - GFF3964 0.15 +0.2 165,912 - GFF3964 0.36 -0.2 165,912 - GFF3964 0.36 +0.3 165,912 - GFF3964 0.36 +0.0 166,003 + GFF3964 0.47 -0.5 166,003 + GFF3964 0.47 -0.1 166,003 + GFF3964 0.47 +0.2 166,004 - GFF3964 0.47 -1.2 166,594 - GFF3965 0.19 -0.5
Or see this region's nucleotide sequence