Strain Fitness in Variovorax sp. SCN45 around GFF3922

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
127,160	-				-0.2
127,232	-				-1.3
127,294	+				-1.1
127,294	+				-1.5
127,294	+				-0.6
127,295	-				+0.1
127,295	-				-0.0
127,295	-				-0.2
127,295	-				-1.5
127,295	-				-1.2
127,295	-				+1.1
127,295	-				-0.7
127,420	+		GFF3921	0.22	+0.2
127,420	+		GFF3921	0.22	-1.4
127,420	+		GFF3921	0.22	-0.8
127,421	-		GFF3921	0.22	+0.2
127,451	-		GFF3921	0.26	-1.0
127,452	+		GFF3921	0.26	+0.8
127,452	+		GFF3921	0.26	-0.8
127,452	+		GFF3921	0.26	-0.2
127,452	+		GFF3921	0.26	-1.2
127,453	-		GFF3921	0.26	-0.2
127,453	-		GFF3921	0.26	-0.2
127,492	+		GFF3921	0.30	-1.2
127,493	-		GFF3921	0.31	-0.7
127,591	+		GFF3921	0.42	+0.1
127,724	-		GFF3921	0.57	-0.7
127,724	-		GFF3921	0.57	-0.7
127,724	-		GFF3921	0.57	-0.2
127,741	+		GFF3921	0.59	+0.5
127,741	+		GFF3921	0.59	-0.8
127,742	-		GFF3921	0.59	-1.0
127,994	-		GFF3921	0.89	+0.2
127,994	-		GFF3921	0.89	+0.1
128,002	+		GFF3921	0.90	-1.0
128,002	+		GFF3921	0.90	-0.4
128,002	+		GFF3921	0.90	-0.8
128,002	+		GFF3921	0.90	+0.2
128,003	-		GFF3921	0.90	-0.2
128,003	-		GFF3921	0.90	-1.0
128,003	-		GFF3921	0.90	+0.8
128,003	-		GFF3921	0.90	-0.5
128,003	-		GFF3921	0.90	-0.5
128,162	+				-0.9
128,163	-				+0.1
128,163	-				+0.3
128,193	+				+0.8
128,193	+				-0.1
128,193	+				+1.8
128,193	+				-1.7
128,193	+				-0.6
128,193	+				+0.0
128,193	+				-1.0
128,194	-				+0.4
128,194	-				+0.2
128,194	-				-0.9
128,194	-				+0.1
128,250	+		GFF3922	0.13	-0.2
128,295	+		GFF3922	0.16	-1.2
128,295	+		GFF3922	0.16	+0.8
128,296	-		GFF3922	0.16	-0.4
128,296	-		GFF3922	0.16	-0.5
128,321	+		GFF3922	0.18	-0.4
128,322	-		GFF3922	0.18	-1.0
128,322	-		GFF3922	0.18	-1.5
128,322	-		GFF3922	0.18	-0.9
128,322	-		GFF3922	0.18	-0.1
128,547	+		GFF3922	0.36	-0.2
128,548	-		GFF3922	0.36	-0.5
128,575	-		GFF3922	0.38	+1.0
128,575	-		GFF3922	0.38	-0.3
128,697	+		GFF3922	0.48	+0.4
128,697	+		GFF3922	0.48	-0.2
128,697	+		GFF3922	0.48	+0.6
128,697	+		GFF3922	0.48	-0.7
128,697	+		GFF3922	0.48	+0.4
128,698	-		GFF3922	0.48	+0.3
128,698	-		GFF3922	0.48	+0.5
128,698	-		GFF3922	0.48	-0.4
128,698	-		GFF3922	0.48	-1.0
128,698	-		GFF3922	0.48	+0.4
128,703	+		GFF3922	0.48	-0.6
128,704	-		GFF3922	0.48	+0.5
128,721	+		GFF3922	0.50	-1.2
128,721	+		GFF3922	0.50	-0.5
128,721	+		GFF3922	0.50	-0.7
128,721	+		GFF3922	0.50	+3.1
128,853	+		GFF3922	0.60	-0.6
128,854	-		GFF3922	0.60	-0.6
128,854	-		GFF3922	0.60	-1.0
128,970	+		GFF3922	0.69	-0.2
128,971	-		GFF3922	0.69	-0.2
128,971	-		GFF3922	0.69	-0.8
128,971	-		GFF3922	0.69	+0.0
128,971	-		GFF3922	0.69	+0.2
129,060	+		GFF3922	0.76	-0.4
129,060	+		GFF3922	0.76	-0.3
129,060	+		GFF3922	0.76	+1.2
129,060	+		GFF3922	0.76	-1.1
129,060	+		GFF3922	0.76	+0.1
129,060	+		GFF3922	0.76	+0.3
129,061	-		GFF3922	0.76	-1.0
129,061	-		GFF3922	0.76	-0.1
129,061	-		GFF3922	0.76	-0.8
129,092	+		GFF3922	0.79	-0.3
129,092	+		GFF3922	0.79	+0.2
129,092	+		GFF3922	0.79	-0.7
129,092	+		GFF3922	0.79	-0.2
129,092	+		GFF3922	0.79	-0.4
129,092	+		GFF3922	0.79	-0.8
129,092	+		GFF3922	0.79	-1.1
129,092	+		GFF3922	0.79	+0.6
129,093	-		GFF3922	0.79	-0.8
129,093	-		GFF3922	0.79	-0.0
129,093	-		GFF3922	0.79	-0.1
129,273	+				-1.3
129,274	-				+0.1
129,396	+				-2.3
129,396	+				-0.6
129,396	+				+4.3
129,397	-				-0.3
129,397	-				-1.0
129,397	-				+0.2
129,397	-				-1.1
129,457	+		GFF3923	0.13	-1.8
129,457	+		GFF3923	0.13	+0.0
129,676	+		GFF3923	0.46	+0.8
129,676	+		GFF3923	0.46	-0.3
129,676	+		GFF3923	0.46	-0.6
129,676	+		GFF3923	0.46	-1.4
129,676	+		GFF3923	0.46	+0.6
129,676	+		GFF3923	0.46	+1.4
129,676	+		GFF3923	0.46	+0.5
129,676	+		GFF3923	0.46	-0.5
129,676	+		GFF3923	0.46	+0.3
129,676	+		GFF3923	0.46	+1.2
129,676	+		GFF3923	0.46	-0.7
129,677	-		GFF3923	0.46	+0.3
129,677	-		GFF3923	0.46	+1.8
129,677	-		GFF3923	0.46	-0.4
129,677	-		GFF3923	0.46	+0.1
129,677	-		GFF3923	0.46	-1.8
129,677	-		GFF3923	0.46	-0.8
129,677	-		GFF3923	0.46	-0.1
129,677	-		GFF3923	0.46	-0.3
129,680	+		GFF3923	0.47	-1.0
129,680	+		GFF3923	0.47	-0.3
129,680	+		GFF3923	0.47	-0.5
129,680	+		GFF3923	0.47	+3.9
129,680	+		GFF3923	0.47	-0.1
129,680	+		GFF3923	0.47	+0.5
129,680	+		GFF3923	0.47	-1.1
129,681	-		GFF3923	0.47	-0.8
129,681	-		GFF3923	0.47	-0.2
129,681	-		GFF3923	0.47	-0.5
129,835	+		GFF3923	0.71	-1.1
129,836	-		GFF3923	0.71	-0.9
129,836	-		GFF3923	0.71	-0.3
129,836	-		GFF3923	0.71	-0.0
129,836	-		GFF3923	0.71	-1.2
129,836	-		GFF3923	0.71	+2.4
129,940	+		GFF3923	0.87	+0.2
129,941	-		GFF3923	0.87	+4.0
129,941	-		GFF3923	0.87	-0.8
130,206	+		GFF3924	0.33	+0.2
130,206	+		GFF3924	0.33	+0.3
130,206	+		GFF3924	0.33	+1.8
130,206	+		GFF3924	0.33	-0.7
130,206	+		GFF3924	0.33	-1.4
130,206	+		GFF3924	0.33	-1.2
130,206	+		GFF3924	0.33	+0.8
130,206	+		GFF3924	0.33	-0.9
130,207	-		GFF3924	0.33	-0.5
130,207	-		GFF3924	0.33	+0.1
130,207	-		GFF3924	0.33	+0.6
130,207	-		GFF3924	0.33	-0.5
130,207	-		GFF3924	0.33	-1.6
130,207	-		GFF3924	0.33	-0.9
130,207	-		GFF3924	0.33	-0.6
130,207	-		GFF3924	0.33	+0.5
130,207	-		GFF3924	0.33	-0.3
130,207	-		GFF3924	0.33	-1.4
130,207	-		GFF3924	0.33	+0.6
130,207	-		GFF3924	0.33	+0.8