Strain Fitness in Variovorax sp. SCN45 around GFF3917

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
121,542	+		GFF3915	0.44	-0.9
121,543	-		GFF3915	0.44	-0.4
121,729	-		GFF3915	0.66	-2.3
121,729	-		GFF3915	0.66	-0.8
121,729	-		GFF3915	0.66	-0.7
121,776	+		GFF3915	0.72	-1.7
121,776	+		GFF3915	0.72	-0.9
121,777	-		GFF3915	0.72	-0.5
121,777	-		GFF3915	0.72	-0.1
121,777	-		GFF3915	0.72	+1.0
121,881	+		GFF3915	0.84	-0.5
121,881	+		GFF3915	0.84	+0.7
121,881	+		GFF3915	0.84	+0.2
121,881	+		GFF3915	0.84	-2.4
121,881	+		GFF3915	0.84	-1.1
121,881	+		GFF3915	0.84	+0.1
121,881	+		GFF3915	0.84	+0.1
121,881	+		GFF3915	0.84	-1.5
121,881	+		GFF3915	0.84	-1.2
121,882	-		GFF3915	0.84	-0.5
121,882	-		GFF3915	0.84	-0.0
121,882	-		GFF3915	0.84	-0.4
121,882	-		GFF3915	0.84	-0.8
121,882	-		GFF3915	0.84	-0.9
121,882	-		GFF3915	0.84	+0.2
121,882	-		GFF3915	0.84	+0.7
121,882	-		GFF3915	0.84	-0.4
121,911	+		GFF3915	0.88	-1.1
121,911	+		GFF3915	0.88	-0.8
121,912	-		GFF3915	0.88	-0.7
121,912	-		GFF3915	0.88	-1.0
121,912	-		GFF3915	0.88	-0.6
121,912	-		GFF3915	0.88	-0.5
121,912	-		GFF3915	0.88	-1.0
122,010	+				-0.4
122,010	+				+0.4
122,011	-				+0.2
122,011	-				-0.4
122,124	+				-0.0
122,124	+				+0.8
122,124	+				-0.4
122,124	+				+1.4
122,124	+				-1.1
122,124	+				-0.9
122,124	+				-0.2
122,124	+				-1.3
122,124	+				-0.5
122,124	+				+0.0
122,124	+				+1.8
122,124	+				-0.5
122,124	+				-0.4
122,124	+				+0.2
122,125	-				-1.7
122,125	-				-0.5
122,125	-				-0.2
122,125	-				-0.9
122,125	-				-2.4
122,125	-				-1.0
122,125	-				-1.8
122,125	-				-0.5
122,125	-				+1.2
122,125	-				-0.2
122,125	-				-2.5
122,125	-				-2.0
122,125	-				-0.2
122,125	-				-1.2
122,125	-				+1.6
122,125	-				-0.3
122,125	-				+0.0
122,125	-				-1.1
122,125	-				-0.9
122,125	-				-0.1
122,593	+				+2.2
122,594	-				+0.2
122,594	-				-0.2
122,594	-				-2.1
122,680	+		GFF3917	0.12	-1.1
122,680	+		GFF3917	0.12	-0.5
122,681	-		GFF3917	0.12	+0.6
122,681	-		GFF3917	0.12	-0.1
122,742	+		GFF3917	0.15	-0.6
122,742	+		GFF3917	0.15	-0.7
122,742	+		GFF3917	0.15	+0.0
122,742	+		GFF3917	0.15	+2.3
122,743	-		GFF3917	0.15	-0.6
122,743	-		GFF3917	0.15	-1.2
122,743	-		GFF3917	0.15	-0.5
122,743	-		GFF3917	0.15	-1.7
123,409	+		GFF3917	0.50	-0.8
123,409	+		GFF3917	0.50	+0.8
123,610	+		GFF3917	0.61	-0.2
123,610	+		GFF3917	0.61	-1.1
123,610	+		GFF3917	0.61	-0.4
123,610	+		GFF3917	0.61	-0.9
123,610	+		GFF3917	0.61	+0.4
123,610	+		GFF3917	0.61	-2.9
123,610	+		GFF3917	0.61	-0.7
123,610	+		GFF3917	0.61	-0.5
123,611	-		GFF3917	0.61	-0.3
123,611	-		GFF3917	0.61	-0.6
123,611	-		GFF3917	0.61	-0.3
123,611	-		GFF3917	0.61	-0.9
123,611	-		GFF3917	0.61	+0.2
123,611	-		GFF3917	0.61	-0.4
123,611	-		GFF3917	0.61	-0.9
123,611	-		GFF3917	0.61	-0.5
123,694	+		GFF3917	0.66	-1.2
123,694	+		GFF3917	0.66	-0.7
123,694	+		GFF3917	0.66	-0.8
123,694	+		GFF3917	0.66	+0.1
123,694	+		GFF3917	0.66	-1.3
123,694	+		GFF3917	0.66	-0.1
123,695	-		GFF3917	0.66	+0.1
123,695	-		GFF3917	0.66	+0.2
123,695	-		GFF3917	0.66	+0.1
123,695	-		GFF3917	0.66	-0.5
123,695	-		GFF3917	0.66	+1.1
123,695	-		GFF3917	0.66	+0.0
123,695	-		GFF3917	0.66	-0.3
123,695	-		GFF3917	0.66	-0.4
123,695	-		GFF3917	0.66	+1.8
123,695	-		GFF3917	0.66	-1.4
123,695	-		GFF3917	0.66	-1.5
123,695	-		GFF3917	0.66	+0.8
123,794	-		GFF3917	0.71	-0.0
123,832	+		GFF3917	0.73	-0.2
123,832	+		GFF3917	0.73	+0.6
123,832	+		GFF3917	0.73	-0.7
123,833	-		GFF3917	0.73	-2.0
123,833	-		GFF3917	0.73	-1.1
123,833	-		GFF3917	0.73	+0.2
123,955	+		GFF3917	0.79	-0.4
123,956	-		GFF3917	0.79	-0.7
124,090	+		GFF3917	0.86	-0.7
124,090	+		GFF3917	0.86	-1.1
124,090	+		GFF3917	0.86	-0.1
124,090	+		GFF3917	0.86	-0.1
124,090	+		GFF3917	0.86	-0.2
124,090	+		GFF3917	0.86	-2.4
124,090	+		GFF3917	0.86	+1.1
124,090	+		GFF3917	0.86	+0.5
124,090	+		GFF3917	0.86	+0.5
124,090	+		GFF3917	0.86	-0.3
124,090	+		GFF3917	0.86	-0.9
124,090	+		GFF3917	0.86	-1.2
124,090	-		GFF3917	0.86	-1.2
124,091	-		GFF3917	0.86	-1.5
124,091	-		GFF3917	0.86	+1.2
124,091	-		GFF3917	0.86	-1.2
124,091	-		GFF3917	0.86	+0.0
124,091	-		GFF3917	0.86	+0.9
124,091	-		GFF3917	0.86	-0.7
124,091	-		GFF3917	0.86	-0.1
124,091	-		GFF3917	0.86	-0.9
124,091	-		GFF3917	0.86	+1.2
124,091	-		GFF3917	0.86	-1.0
124,091	-		GFF3917	0.86	-0.3
124,091	-		GFF3917	0.86	-0.9
124,189	+				-1.0
124,189	+				-1.7
124,189	+				-0.7
124,189	+				-1.0
124,189	+				-1.8
124,189	+				-0.7
124,189	+				-0.4
124,189	+				+0.3
124,190	-				-0.9
124,190	-				-0.4
124,190	-				-1.8
124,190	-				-0.5
124,211	+				+0.6
124,255	+				-0.9
124,255	+				-0.8
124,256	-				-0.6
124,277	-				+0.1
124,277	-				-0.4
124,294	+				-1.3
124,294	+				-0.6
124,294	+				-0.1
124,294	+				-0.4
124,294	+				+0.9
124,294	+				-0.2
124,294	+				-0.8
124,294	+				-0.7
124,294	+				-0.3
124,294	+				+0.8
124,294	+				-1.1
124,294	+				+0.3
124,294	+				-0.0
124,294	+				+0.3
124,294	+				-1.0
124,294	+				-0.4
124,294	+				-0.9
124,294	+				-1.5
124,294	+				-0.2
124,294	+				+0.1
124,294	+				+0.0
124,294	+				-0.2
124,294	+				-1.0
124,294	+				-0.8
124,295	-				-0.8
124,295	-				-0.5
124,295	-				-0.3
124,295	-				+0.5
124,295	-				+0.3
124,295	-				-1.3
124,295	-				-0.1
124,295	-				-2.1
124,295	-				-0.8
124,295	-				-1.4
124,295	-				-1.0
124,295	-				-0.6
124,295	-				-0.0
124,295	-				-0.7
124,295	-				+0.3
124,295	-				-0.7
124,295	-				+0.3
124,295	-				-1.1
124,295	-				-1.8
124,295	-				+0.3
124,295	-				-0.7
124,295	-				-0.4
124,295	-				+0.2
124,295	-				+0.6
124,295	-				-0.6
124,295	-				+0.0
124,295	-				-0.7
124,296	+				-1.7
124,296	+				-0.6
124,297	-				-1.1
124,297	-				-1.0
124,297	-				-0.1
124,297	-				+0.2
124,297	-				-0.5
124,297	-				-0.4
124,297	-				+0.1
124,315	+				-0.8
124,315	+				+0.2
124,315	+				-0.5
124,315	-				+0.8
124,316	-				-1.2
124,316	-				+1.4
124,345	+				+1.3
124,345	+				-0.4
124,346	-				-0.2
124,366	+				-0.5
124,366	+				+0.5
124,367	-				-0.5
124,367	-				+1.3
124,367	-				-1.2
124,425	+		GFF3918	0.16	-1.3