Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3914 and GFF3915 are separated by 52 nucleotides GFF3915 and GFF3916 are separated by 147 nucleotides GFF3916 and GFF3917 overlap by 8 nucleotides
GFF3914 - Ferrous iron transport peroxidase EfeB, at 119,798 to 121,123
GFF3914
GFF3915 - Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain, at 121,176 to 122,012
GFF3915
GFF3916 - Ferrous iron transporter-associated protein FeoA, at 122,160 to 122,459
GFF3916
GFF3917 - Ferrous iron transporter FeoB, at 122,452 to 124,347
GFF3917
Position (kb) 121
122
123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.654 kb on - strand, within GFF3914 at 120.654 kb on - strand, within GFF3914 at 120.794 kb on + strand, within GFF3914 at 120.794 kb on + strand, within GFF3914 at 120.794 kb on + strand, within GFF3914 at 120.905 kb on + strand, within GFF3914 at 120.906 kb on - strand, within GFF3914 at 120.906 kb on - strand, within GFF3914 at 120.962 kb on + strand, within GFF3914 at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.032 kb on - strand at 121.032 kb on - strand at 121.032 kb on - strand at 121.032 kb on - strand at 121.166 kb on + strand at 121.166 kb on + strand at 121.166 kb on + strand at 121.166 kb on + strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.237 kb on - strand at 121.237 kb on - strand at 121.237 kb on - strand at 121.237 kb on - strand at 121.296 kb on + strand, within GFF3915 at 121.296 kb on + strand, within GFF3915 at 121.296 kb on + strand, within GFF3915 at 121.297 kb on - strand, within GFF3915 at 121.297 kb on - strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.399 kb on - strand, within GFF3915 at 121.399 kb on - strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.542 kb on + strand, within GFF3915 at 121.543 kb on - strand, within GFF3915 at 121.729 kb on - strand, within GFF3915 at 121.729 kb on - strand, within GFF3915 at 121.729 kb on - strand, within GFF3915 at 121.776 kb on + strand, within GFF3915 at 121.776 kb on + strand, within GFF3915 at 121.777 kb on - strand, within GFF3915 at 121.777 kb on - strand, within GFF3915 at 121.777 kb on - strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.911 kb on + strand, within GFF3915 at 121.911 kb on + strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 122.010 kb on + strand at 122.010 kb on + strand at 122.011 kb on - strand at 122.011 kb on - strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.124 kb on + strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.125 kb on - strand at 122.593 kb on + strand at 122.594 kb on - strand at 122.594 kb on - strand at 122.594 kb on - strand at 122.680 kb on + strand, within GFF3917 at 122.680 kb on + strand, within GFF3917 at 122.681 kb on - strand, within GFF3917 at 122.681 kb on - strand, within GFF3917 at 122.742 kb on + strand, within GFF3917 at 122.742 kb on + strand, within GFF3917 at 122.742 kb on + strand, within GFF3917 at 122.742 kb on + strand, within GFF3917 at 122.743 kb on - strand, within GFF3917 at 122.743 kb on - strand, within GFF3917 at 122.743 kb on - strand, within GFF3917 at 122.743 kb on - strand, within GFF3917
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 120,653 + GFF3914 0.64 -0.1 120,653 + GFF3914 0.64 +0.3 120,653 + GFF3914 0.64 +0.4 120,653 + GFF3914 0.64 -1.2 120,654 - GFF3914 0.65 -0.3 120,654 - GFF3914 0.65 -2.3 120,794 + GFF3914 0.75 -0.8 120,794 + GFF3914 0.75 -0.5 120,794 + GFF3914 0.75 -0.8 120,905 + GFF3914 0.83 -1.2 120,906 - GFF3914 0.84 +0.1 120,906 - GFF3914 0.84 -1.2 120,962 + GFF3914 0.88 +0.3 121,031 + -0.2 121,031 + -0.8 121,031 + -1.4 121,031 + -0.1 121,031 + -0.4 121,031 + -1.2 121,031 + +0.1 121,032 - +0.1 121,032 - +0.7 121,032 - +0.4 121,032 - -0.9 121,166 + -1.2 121,166 + +0.6 121,166 + -1.1 121,166 + -1.1 121,167 - -0.5 121,167 - -0.2 121,167 - -0.8 121,167 - +0.0 121,167 - -0.1 121,167 - -0.6 121,167 - -0.7 121,167 - -0.1 121,167 - -0.5 121,167 - +0.6 121,167 - +1.0 121,236 + +0.0 121,236 + -0.5 121,236 + -0.9 121,236 + +0.8 121,236 + -0.3 121,236 + -1.5 121,236 + +0.6 121,237 - -1.0 121,237 - -0.9 121,237 - -0.6 121,237 - +0.2 121,296 + GFF3915 0.14 -0.3 121,296 + GFF3915 0.14 -0.6 121,296 + GFF3915 0.14 -0.5 121,297 - GFF3915 0.14 -0.4 121,297 - GFF3915 0.14 -1.0 121,305 + GFF3915 0.15 +0.8 121,305 + GFF3915 0.15 -0.8 121,305 + GFF3915 0.15 -0.1 121,305 + GFF3915 0.15 -1.0 121,305 + GFF3915 0.15 +0.3 121,305 + GFF3915 0.15 -0.7 121,305 + GFF3915 0.15 -0.1 121,305 + GFF3915 0.15 -0.4 121,306 - GFF3915 0.16 -0.3 121,306 - GFF3915 0.16 -0.7 121,306 - GFF3915 0.16 -0.8 121,306 - GFF3915 0.16 -0.1 121,306 - GFF3915 0.16 -0.1 121,306 - GFF3915 0.16 -1.1 121,306 - GFF3915 0.16 -0.2 121,398 + GFF3915 0.27 -1.0 121,398 + GFF3915 0.27 +0.2 121,398 + GFF3915 0.27 -0.0 121,398 + GFF3915 0.27 -0.6 121,398 + GFF3915 0.27 -0.8 121,399 - GFF3915 0.27 -0.0 121,399 - GFF3915 0.27 +1.2 121,419 + GFF3915 0.29 -1.0 121,419 + GFF3915 0.29 -0.9 121,419 + GFF3915 0.29 -0.3 121,419 + GFF3915 0.29 -0.3 121,419 + GFF3915 0.29 -0.8 121,419 + GFF3915 0.29 +0.8 121,420 - GFF3915 0.29 -0.7 121,420 - GFF3915 0.29 +1.1 121,420 - GFF3915 0.29 +1.5 121,420 - GFF3915 0.29 -0.7 121,420 - GFF3915 0.29 -0.7 121,420 - GFF3915 0.29 -0.1 121,542 + GFF3915 0.44 -0.9 121,543 - GFF3915 0.44 -0.4 121,729 - GFF3915 0.66 -2.3 121,729 - GFF3915 0.66 -0.8 121,729 - GFF3915 0.66 -0.7 121,776 + GFF3915 0.72 -1.7 121,776 + GFF3915 0.72 -0.9 121,777 - GFF3915 0.72 -0.5 121,777 - GFF3915 0.72 -0.1 121,777 - GFF3915 0.72 +1.0 121,881 + GFF3915 0.84 -0.5 121,881 + GFF3915 0.84 +0.7 121,881 + GFF3915 0.84 +0.2 121,881 + GFF3915 0.84 -2.4 121,881 + GFF3915 0.84 -1.1 121,881 + GFF3915 0.84 +0.1 121,881 + GFF3915 0.84 +0.1 121,881 + GFF3915 0.84 -1.5 121,881 + GFF3915 0.84 -1.2 121,882 - GFF3915 0.84 -0.5 121,882 - GFF3915 0.84 -0.0 121,882 - GFF3915 0.84 -0.4 121,882 - GFF3915 0.84 -0.8 121,882 - GFF3915 0.84 -0.9 121,882 - GFF3915 0.84 +0.2 121,882 - GFF3915 0.84 +0.7 121,882 - GFF3915 0.84 -0.4 121,911 + GFF3915 0.88 -1.1 121,911 + GFF3915 0.88 -0.8 121,912 - GFF3915 0.88 -0.7 121,912 - GFF3915 0.88 -1.0 121,912 - GFF3915 0.88 -0.6 121,912 - GFF3915 0.88 -0.5 121,912 - GFF3915 0.88 -1.0 122,010 + -0.4 122,010 + +0.4 122,011 - +0.2 122,011 - -0.4 122,124 + -0.0 122,124 + +0.8 122,124 + -0.4 122,124 + +1.4 122,124 + -1.1 122,124 + -0.9 122,124 + -0.2 122,124 + -1.3 122,124 + -0.5 122,124 + +0.0 122,124 + +1.8 122,124 + -0.5 122,124 + -0.4 122,124 + +0.2 122,125 - -1.7 122,125 - -0.5 122,125 - -0.2 122,125 - -0.9 122,125 - -2.4 122,125 - -1.0 122,125 - -1.8 122,125 - -0.5 122,125 - +1.2 122,125 - -0.2 122,125 - -2.5 122,125 - -2.0 122,125 - -0.2 122,125 - -1.2 122,125 - +1.6 122,125 - -0.3 122,125 - +0.0 122,125 - -1.1 122,125 - -0.9 122,125 - -0.1 122,593 + +2.2 122,594 - +0.2 122,594 - -0.2 122,594 - -2.1 122,680 + GFF3917 0.12 -1.1 122,680 + GFF3917 0.12 -0.5 122,681 - GFF3917 0.12 +0.6 122,681 - GFF3917 0.12 -0.1 122,742 + GFF3917 0.15 -0.6 122,742 + GFF3917 0.15 -0.7 122,742 + GFF3917 0.15 +0.0 122,742 + GFF3917 0.15 +2.3 122,743 - GFF3917 0.15 -0.6 122,743 - GFF3917 0.15 -1.2 122,743 - GFF3917 0.15 -0.5 122,743 - GFF3917 0.15 -1.7
Or see this region's nucleotide sequence