Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3872 and GFF3873 overlap by 4 nucleotides GFF3873 and GFF3874 are separated by 13 nucleotides GFF3874 and GFF3875 overlap by 4 nucleotides
GFF3872 - DNA recombination and repair protein RecO, at 70,306 to 71,076
GFF3872
GFF3873 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 71,073 to 71,834
GFF3873
GFF3874 - Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7), at 71,848 to 72,240
GFF3874
GFF3875 - beta-N-acetylglucosaminidase (EC 3.2.1.52), at 72,237 to 73,319
GFF3875
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.040 kb on + strand at 71.040 kb on + strand at 71.041 kb on - strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.854 kb on + strand at 71.854 kb on + strand at 71.854 kb on + strand at 71.855 kb on - strand at 71.856 kb on - strand at 72.004 kb on + strand, within GFF3874 at 72.004 kb on + strand, within GFF3874 at 72.005 kb on - strand, within GFF3874 at 72.005 kb on - strand, within GFF3874 at 72.205 kb on + strand at 72.235 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.861 kb on + strand, within GFF3875 at 72.861 kb on + strand, within GFF3875 at 72.861 kb on + strand, within GFF3875 at 72.862 kb on - strand, within GFF3875 at 72.912 kb on + strand, within GFF3875 at 72.913 kb on - strand, within GFF3875 at 73.035 kb on + strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.059 kb on + strand, within GFF3875 at 73.059 kb on + strand, within GFF3875 at 73.060 kb on - strand, within GFF3875
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 71,014 + -0.4 71,014 + -1.8 71,014 + -0.7 71,014 + -1.4 71,014 + +0.8 71,014 + -0.4 71,014 + +0.3 71,015 - -0.6 71,015 - -0.4 71,015 - -0.5 71,015 - -2.0 71,015 - -0.6 71,015 - -1.2 71,015 - +0.7 71,015 - +0.7 71,015 - -0.7 71,040 + -0.5 71,040 + -1.8 71,041 - -0.7 71,072 + -0.5 71,072 + -0.5 71,072 + +0.0 71,072 + +3.1 71,072 + +0.4 71,072 + -1.0 71,072 + -0.2 71,072 + -1.0 71,073 - -2.7 71,073 - -1.0 71,073 - -0.8 71,073 - -1.1 71,073 - -0.3 71,073 - -2.1 71,854 + -0.1 71,854 + -0.8 71,854 + -0.4 71,855 - -0.0 71,856 - -0.3 72,004 + GFF3874 0.40 +0.2 72,004 + GFF3874 0.40 -1.5 72,005 - GFF3874 0.40 -0.5 72,005 - GFF3874 0.40 -0.9 72,205 + -0.7 72,235 + -0.5 72,236 + -2.1 72,236 + -1.1 72,236 + -0.8 72,236 + +0.5 72,236 + -1.7 72,236 + -0.7 72,236 + -0.5 72,237 - -0.0 72,237 - -0.2 72,237 - -1.0 72,237 - -1.0 72,237 - -2.2 72,237 - -0.9 72,237 - -0.9 72,237 - +0.7 72,237 - -1.4 72,237 - -0.8 72,237 - +0.1 72,237 - -2.3 72,237 - -0.2 72,861 + GFF3875 0.58 -0.6 72,861 + GFF3875 0.58 -0.6 72,861 + GFF3875 0.58 -0.4 72,862 - GFF3875 0.58 -2.3 72,912 + GFF3875 0.62 -0.3 72,913 - GFF3875 0.62 -0.1 73,035 + GFF3875 0.74 -2.2 73,036 - GFF3875 0.74 -0.0 73,036 - GFF3875 0.74 +0.1 73,036 - GFF3875 0.74 -0.7 73,036 - GFF3875 0.74 -0.2 73,036 - GFF3875 0.74 +0.5 73,059 + GFF3875 0.76 -1.2 73,059 + GFF3875 0.76 -0.7 73,060 - GFF3875 0.76 -0.9
Or see this region's nucleotide sequence