Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF385 and GFF386 are separated by 38 nucleotides GFF386 and GFF387 are separated by 30 nucleotides
GFF385 - Outer membrane protein assembly factor YaeT, at 415,806 to 418,241
GFF385
GFF386 - Membrane-associated zinc metalloprotease, at 418,280 to 419,650
GFF386
GFF387 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 419,681 to 420,868
GFF387
Position (kb) 418
419
420 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 418.282 kb on - strand at 418.413 kb on + strand at 418.413 kb on + strand at 418.413 kb on + strand at 418.413 kb on + strand at 418.413 kb on + strand at 418.413 kb on + strand at 418.413 kb on + strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.414 kb on - strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.416 kb on + strand at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.417 kb on - strand, within GFF386 at 418.503 kb on + strand, within GFF386 at 418.503 kb on + strand, within GFF386 at 418.503 kb on + strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.504 kb on - strand, within GFF386 at 418.539 kb on + strand, within GFF386 at 418.539 kb on + strand, within GFF386 at 418.540 kb on - strand, within GFF386 at 418.540 kb on - strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.713 kb on + strand, within GFF386 at 418.714 kb on - strand, within GFF386 at 418.714 kb on - strand, within GFF386 at 418.714 kb on - strand, within GFF386 at 418.714 kb on - strand, within GFF386 at 418.714 kb on - strand, within GFF386 at 418.714 kb on - strand, within GFF386 at 418.754 kb on + strand, within GFF386 at 418.754 kb on + strand, within GFF386 at 418.754 kb on + strand, within GFF386 at 418.755 kb on - strand, within GFF386 at 418.850 kb on + strand, within GFF386 at 418.850 kb on + strand, within GFF386 at 418.850 kb on + strand, within GFF386 at 418.850 kb on + strand, within GFF386 at 418.850 kb on + strand, within GFF386 at 418.850 kb on + strand, within GFF386 at 418.851 kb on - strand, within GFF386 at 418.851 kb on - strand, within GFF386 at 418.851 kb on - strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.199 kb on + strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.200 kb on - strand, within GFF386 at 419.301 kb on + strand, within GFF386 at 419.301 kb on + strand, within GFF386 at 419.301 kb on + strand, within GFF386 at 419.301 kb on + strand, within GFF386 at 419.301 kb on + strand, within GFF386 at 419.302 kb on - strand, within GFF386 at 419.302 kb on - strand, within GFF386 at 419.302 kb on - strand, within GFF386 at 419.302 kb on - strand, within GFF386 at 419.302 kb on - strand, within GFF386 at 419.302 kb on - strand, within GFF386 at 419.377 kb on + strand, within GFF386 at 419.378 kb on - strand, within GFF386 at 419.378 kb on - strand, within GFF386 at 419.442 kb on + strand, within GFF386 at 419.442 kb on + strand, within GFF386 at 419.443 kb on - strand, within GFF386 at 419.583 kb on + strand at 419.583 kb on + strand at 419.593 kb on - strand at 419.593 kb on - strand at 419.636 kb on + strand at 419.636 kb on + strand at 419.636 kb on + strand at 419.636 kb on + strand at 419.636 kb on + strand at 419.637 kb on - strand at 419.637 kb on - strand at 419.637 kb on - strand at 419.637 kb on - strand at 419.637 kb on - strand at 419.637 kb on - strand at 419.637 kb on - strand at 419.637 kb on - strand at 419.644 kb on + strand at 419.644 kb on + strand at 419.644 kb on + strand at 419.644 kb on + strand at 419.644 kb on + strand at 419.644 kb on + strand at 419.644 kb on + strand at 419.644 kb on + strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.645 kb on - strand at 419.668 kb on + strand at 419.668 kb on + strand at 419.668 kb on + strand at 419.668 kb on + strand at 419.668 kb on + strand at 419.668 kb on + strand at 419.669 kb on - strand at 419.669 kb on - strand at 419.669 kb on - strand at 419.669 kb on - strand at 419.669 kb on - strand at 419.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 418,282 - +0.0 418,413 + +2.0 418,413 + -1.3 418,413 + +0.5 418,413 + -1.2 418,413 + -1.7 418,413 + -1.0 418,413 + -1.6 418,414 - -0.8 418,414 - -0.8 418,414 - -0.3 418,414 - -0.2 418,414 - -0.2 418,414 - -0.3 418,414 - -0.1 418,414 - +1.0 418,414 - +1.2 418,414 - -0.2 418,414 - +2.0 418,414 - +3.0 418,414 - -1.1 418,416 + -1.8 418,416 + -0.5 418,416 + -0.4 418,416 + +0.4 418,416 + -1.9 418,416 + -1.5 418,416 + +0.2 418,416 + +1.2 418,416 + -1.2 418,416 + +0.5 418,416 + -0.0 418,416 + -0.7 418,416 + -1.2 418,417 - GFF386 0.10 -0.2 418,417 - GFF386 0.10 -0.1 418,417 - GFF386 0.10 -0.0 418,417 - GFF386 0.10 -0.1 418,417 - GFF386 0.10 +1.2 418,417 - GFF386 0.10 +0.4 418,417 - GFF386 0.10 +0.2 418,417 - GFF386 0.10 -0.3 418,417 - GFF386 0.10 -0.4 418,417 - GFF386 0.10 -0.0 418,417 - GFF386 0.10 -0.2 418,417 - GFF386 0.10 -0.3 418,417 - GFF386 0.10 +0.3 418,417 - GFF386 0.10 +0.1 418,417 - GFF386 0.10 -0.4 418,417 - GFF386 0.10 -0.0 418,417 - GFF386 0.10 -2.2 418,417 - GFF386 0.10 -0.0 418,417 - GFF386 0.10 +1.0 418,503 + GFF386 0.16 -1.6 418,503 + GFF386 0.16 -0.2 418,503 + GFF386 0.16 -0.1 418,504 - GFF386 0.16 -0.3 418,504 - GFF386 0.16 +0.8 418,504 - GFF386 0.16 -0.3 418,504 - GFF386 0.16 +0.4 418,504 - GFF386 0.16 +0.9 418,504 - GFF386 0.16 -0.3 418,504 - GFF386 0.16 -0.5 418,504 - GFF386 0.16 +0.1 418,504 - GFF386 0.16 +0.2 418,504 - GFF386 0.16 +0.8 418,504 - GFF386 0.16 +0.1 418,504 - GFF386 0.16 -0.3 418,504 - GFF386 0.16 -0.2 418,504 - GFF386 0.16 +0.7 418,539 + GFF386 0.19 +0.7 418,539 + GFF386 0.19 -0.3 418,540 - GFF386 0.19 -0.3 418,540 - GFF386 0.19 -0.1 418,713 + GFF386 0.32 +0.0 418,713 + GFF386 0.32 -0.5 418,713 + GFF386 0.32 +0.8 418,713 + GFF386 0.32 -0.6 418,713 + GFF386 0.32 +0.8 418,713 + GFF386 0.32 +0.5 418,713 + GFF386 0.32 -1.0 418,713 + GFF386 0.32 -0.0 418,713 + GFF386 0.32 -0.3 418,713 + GFF386 0.32 +0.5 418,713 + GFF386 0.32 -0.8 418,713 + GFF386 0.32 +0.2 418,713 + GFF386 0.32 +0.1 418,713 + GFF386 0.32 -0.0 418,714 - GFF386 0.32 -0.7 418,714 - GFF386 0.32 +0.2 418,714 - GFF386 0.32 -1.6 418,714 - GFF386 0.32 +0.1 418,714 - GFF386 0.32 +0.3 418,714 - GFF386 0.32 -0.5 418,754 + GFF386 0.35 +0.5 418,754 + GFF386 0.35 -0.4 418,754 + GFF386 0.35 -0.1 418,755 - GFF386 0.35 -0.0 418,850 + GFF386 0.42 -0.7 418,850 + GFF386 0.42 -0.3 418,850 + GFF386 0.42 -0.0 418,850 + GFF386 0.42 -0.5 418,850 + GFF386 0.42 -2.3 418,850 + GFF386 0.42 -0.8 418,851 - GFF386 0.42 +0.3 418,851 - GFF386 0.42 +1.3 418,851 - GFF386 0.42 +0.1 419,199 + GFF386 0.67 -0.3 419,199 + GFF386 0.67 +0.5 419,199 + GFF386 0.67 -0.4 419,199 + GFF386 0.67 -1.6 419,199 + GFF386 0.67 +0.4 419,199 + GFF386 0.67 +1.0 419,199 + GFF386 0.67 +0.1 419,199 + GFF386 0.67 +0.4 419,199 + GFF386 0.67 +0.2 419,199 + GFF386 0.67 -0.2 419,199 + GFF386 0.67 +0.2 419,199 + GFF386 0.67 -1.0 419,199 + GFF386 0.67 -1.5 419,199 + GFF386 0.67 -1.1 419,199 + GFF386 0.67 -0.0 419,199 + GFF386 0.67 -0.4 419,199 + GFF386 0.67 +0.1 419,199 + GFF386 0.67 +0.3 419,200 - GFF386 0.67 +3.0 419,200 - GFF386 0.67 -0.9 419,200 - GFF386 0.67 +0.5 419,200 - GFF386 0.67 -0.3 419,200 - GFF386 0.67 +0.6 419,200 - GFF386 0.67 -0.9 419,200 - GFF386 0.67 -0.2 419,200 - GFF386 0.67 +0.2 419,200 - GFF386 0.67 +0.5 419,200 - GFF386 0.67 +0.3 419,200 - GFF386 0.67 -0.1 419,200 - GFF386 0.67 +1.0 419,200 - GFF386 0.67 -0.1 419,200 - GFF386 0.67 -0.5 419,301 + GFF386 0.74 +1.1 419,301 + GFF386 0.74 -0.1 419,301 + GFF386 0.74 +1.3 419,301 + GFF386 0.74 +1.0 419,301 + GFF386 0.74 -0.5 419,302 - GFF386 0.75 +0.5 419,302 - GFF386 0.75 +1.7 419,302 - GFF386 0.75 -1.1 419,302 - GFF386 0.75 -0.1 419,302 - GFF386 0.75 +1.3 419,302 - GFF386 0.75 -0.2 419,377 + GFF386 0.80 -0.2 419,378 - GFF386 0.80 -0.5 419,378 - GFF386 0.80 -0.3 419,442 + GFF386 0.85 +0.3 419,442 + GFF386 0.85 +0.2 419,443 - GFF386 0.85 -0.6 419,583 + -0.1 419,583 + -0.3 419,593 - -0.8 419,593 - +1.3 419,636 + -0.6 419,636 + +0.2 419,636 + -1.0 419,636 + +0.8 419,636 + -0.1 419,637 - +1.0 419,637 - -0.9 419,637 - +0.1 419,637 - -1.3 419,637 - -0.5 419,637 - -2.3 419,637 - -1.1 419,637 - +0.4 419,644 + -0.6 419,644 + +0.8 419,644 + +1.3 419,644 + -0.3 419,644 + +0.3 419,644 + -0.1 419,644 + -0.5 419,644 + -0.6 419,645 - +0.8 419,645 - -0.3 419,645 - +0.8 419,645 - -0.4 419,645 - +0.1 419,645 - +0.4 419,645 - -1.3 419,645 - +0.2 419,645 - -0.0 419,645 - -0.2 419,645 - +0.0 419,645 - -0.0 419,645 - +0.7 419,645 - -0.2 419,645 - -0.9 419,645 - +0.5 419,645 - -1.8 419,645 - +0.4 419,645 - -0.1 419,645 - -0.2 419,668 + -0.2 419,668 + -0.6 419,668 + -1.6 419,668 + -0.0 419,668 + -0.0 419,668 + +2.0 419,669 - -0.3 419,669 - -0.0 419,669 - +0.4 419,669 - +0.8 419,669 - +0.2 419,669 - -0.3
Or see this region's nucleotide sequence