Strain Fitness in Variovorax sp. SCN45 around GFF3852

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3851 and GFF3852 are separated by 2 nucleotidesGFF3852 and GFF3853 overlap by 4 nucleotidesGFF3853 and GFF3854 are separated by 82 nucleotides GFF3851 - Uncharacterized MFS-type transporter, at 51,123 to 52,274 GFF3851 GFF3852 - Tetrapyrrole methylase family protein, at 52,277 to 53,038 GFF3852 GFF3853 - Septum formation protein Maf, at 53,035 to 53,616 GFF3853 GFF3854 - FIG01269488: protein, clustered with ribosomal protein L32p, at 53,699 to 54,268 GFF3854 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 51.456 kb on + strand, within GFF3851at 51.456 kb on + strand, within GFF3851at 51.456 kb on + strand, within GFF3851at 51.456 kb on + strand, within GFF3851at 51.456 kb on - strand, within GFF3851at 51.457 kb on - strand, within GFF3851at 51.457 kb on - strand, within GFF3851at 51.457 kb on - strand, within GFF3851at 51.457 kb on - strand, within GFF3851at 51.541 kb on + strand, within GFF3851at 51.541 kb on + strand, within GFF3851at 51.541 kb on + strand, within GFF3851at 51.541 kb on + strand, within GFF3851at 51.542 kb on - strand, within GFF3851at 51.542 kb on - strand, within GFF3851at 51.542 kb on - strand, within GFF3851at 51.542 kb on - strand, within GFF3851at 51.542 kb on - strand, within GFF3851at 51.542 kb on - strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.589 kb on + strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.590 kb on - strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.607 kb on + strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.608 kb on - strand, within GFF3851at 51.972 kb on + strand, within GFF3851at 51.972 kb on + strand, within GFF3851at 51.972 kb on + strand, within GFF3851at 51.972 kb on + strand, within GFF3851at 51.972 kb on + strand, within GFF3851at 51.973 kb on - strand, within GFF3851at 51.973 kb on - strand, within GFF3851at 51.973 kb on - strand, within GFF3851at 51.973 kb on - strand, within GFF3851at 51.992 kb on - strand, within GFF3851at 51.992 kb on - strand, within GFF3851at 51.992 kb on - strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.030 kb on + strand, within GFF3851at 52.031 kb on - strand, within GFF3851at 52.031 kb on - strand, within GFF3851at 52.031 kb on - strand, within GFF3851at 52.031 kb on - strand, within GFF3851at 52.031 kb on - strand, within GFF3851at 52.031 kb on - strand, within GFF3851at 52.165 kb on + strandat 52.165 kb on + strandat 52.166 kb on - strandat 52.166 kb on - strandat 52.166 kb on - strandat 52.430 kb on + strand, within GFF3852at 52.430 kb on + strand, within GFF3852at 52.430 kb on + strand, within GFF3852at 52.431 kb on - strand, within GFF3852at 52.431 kb on - strand, within GFF3852at 52.431 kb on - strand, within GFF3852at 52.560 kb on + strand, within GFF3852at 52.817 kb on + strand, within GFF3852at 52.817 kb on + strand, within GFF3852at 52.818 kb on - strand, within GFF3852at 52.818 kb on - strand, within GFF3852at 52.818 kb on - strand, within GFF3852at 52.884 kb on + strand, within GFF3852at 52.884 kb on + strand, within GFF3852at 52.884 kb on + strand, within GFF3852at 52.884 kb on + strand, within GFF3852at 52.884 kb on + strand, within GFF3852at 52.885 kb on - strand, within GFF3852at 52.885 kb on - strand, within GFF3852at 53.019 kb on + strandat 53.019 kb on + strandat 53.019 kb on + strandat 53.019 kb on + strandat 53.019 kb on + strandat 53.019 kb on + strandat 53.020 kb on - strandat 53.020 kb on - strandat 53.020 kb on - strandat 53.020 kb on - strandat 53.020 kb on - strandat 53.020 kb on - strandat 53.686 kb on + strandat 53.686 kb on + strandat 53.686 kb on + strandat 53.789 kb on + strand, within GFF3854at 53.789 kb on + strand, within GFF3854at 53.789 kb on + strand, within GFF3854at 53.789 kb on + strand, within GFF3854at 53.790 kb on - strand, within GFF3854

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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51,456 + GFF3851 0.29 +0.5
51,456 + GFF3851 0.29 +0.1
51,456 + GFF3851 0.29 +0.6
51,456 + GFF3851 0.29 -0.0
51,456 - GFF3851 0.29 -0.9
51,457 - GFF3851 0.29 -0.4
51,457 - GFF3851 0.29 +2.2
51,457 - GFF3851 0.29 -1.0
51,457 - GFF3851 0.29 -1.0
51,541 + GFF3851 0.36 +0.2
51,541 + GFF3851 0.36 +0.1
51,541 + GFF3851 0.36 -0.6
51,541 + GFF3851 0.36 -1.3
51,542 - GFF3851 0.36 -0.4
51,542 - GFF3851 0.36 -0.2
51,542 - GFF3851 0.36 -0.8
51,542 - GFF3851 0.36 +0.2
51,542 - GFF3851 0.36 +0.6
51,542 - GFF3851 0.36 +0.2
51,589 + GFF3851 0.40 -0.8
51,589 + GFF3851 0.40 -0.4
51,589 + GFF3851 0.40 -0.8
51,589 + GFF3851 0.40 -0.6
51,589 + GFF3851 0.40 -0.1
51,589 + GFF3851 0.40 -2.2
51,589 + GFF3851 0.40 -0.8
51,589 + GFF3851 0.40 -0.3
51,589 + GFF3851 0.40 -0.1
51,589 + GFF3851 0.40 +0.0
51,589 + GFF3851 0.40 -0.1
51,589 + GFF3851 0.40 +0.8
51,589 + GFF3851 0.40 +0.4
51,589 + GFF3851 0.40 -0.6
51,590 - GFF3851 0.41 -0.8
51,590 - GFF3851 0.41 -0.4
51,590 - GFF3851 0.41 -0.9
51,590 - GFF3851 0.41 +0.0
51,590 - GFF3851 0.41 -0.7
51,590 - GFF3851 0.41 +0.8
51,590 - GFF3851 0.41 -0.2
51,590 - GFF3851 0.41 -0.4
51,590 - GFF3851 0.41 -0.1
51,590 - GFF3851 0.41 -2.3
51,590 - GFF3851 0.41 +1.8
51,590 - GFF3851 0.41 -0.5
51,590 - GFF3851 0.41 -0.4
51,590 - GFF3851 0.41 -0.7
51,590 - GFF3851 0.41 -0.5
51,590 - GFF3851 0.41 -0.9
51,590 - GFF3851 0.41 +0.2
51,590 - GFF3851 0.41 -0.7
51,590 - GFF3851 0.41 -0.9
51,590 - GFF3851 0.41 -0.3
51,607 + GFF3851 0.42 -0.8
51,607 + GFF3851 0.42 -0.8
51,607 + GFF3851 0.42 -0.2
51,607 + GFF3851 0.42 -1.1
51,607 + GFF3851 0.42 +1.8
51,607 + GFF3851 0.42 -0.6
51,607 + GFF3851 0.42 -1.5
51,607 + GFF3851 0.42 -0.4
51,607 + GFF3851 0.42 -0.4
51,607 + GFF3851 0.42 -0.9
51,607 + GFF3851 0.42 -0.5
51,608 - GFF3851 0.42 +0.0
51,608 - GFF3851 0.42 -0.3
51,608 - GFF3851 0.42 -0.6
51,608 - GFF3851 0.42 -0.2
51,608 - GFF3851 0.42 +1.2
51,608 - GFF3851 0.42 -0.5
51,608 - GFF3851 0.42 +1.8
51,608 - GFF3851 0.42 -0.2
51,608 - GFF3851 0.42 +0.1
51,608 - GFF3851 0.42 -0.5
51,608 - GFF3851 0.42 +0.8
51,608 - GFF3851 0.42 +0.2
51,608 - GFF3851 0.42 -0.5
51,608 - GFF3851 0.42 -0.0
51,608 - GFF3851 0.42 +0.5
51,608 - GFF3851 0.42 -0.1
51,608 - GFF3851 0.42 -0.2
51,972 + GFF3851 0.74 -1.0
51,972 + GFF3851 0.74 +1.1
51,972 + GFF3851 0.74 -1.5
51,972 + GFF3851 0.74 -0.2
51,972 + GFF3851 0.74 +0.8
51,973 - GFF3851 0.74 -0.5
51,973 - GFF3851 0.74 +0.8
51,973 - GFF3851 0.74 +0.8
51,973 - GFF3851 0.74 -0.2
51,992 - GFF3851 0.75 -0.8
51,992 - GFF3851 0.75 +0.8
51,992 - GFF3851 0.75 -0.1
52,030 + GFF3851 0.79 -0.8
52,030 + GFF3851 0.79 -0.5
52,030 + GFF3851 0.79 -0.6
52,030 + GFF3851 0.79 +0.0
52,030 + GFF3851 0.79 -0.0
52,030 + GFF3851 0.79 -2.9
52,030 + GFF3851 0.79 +0.8
52,030 + GFF3851 0.79 -0.7
52,030 + GFF3851 0.79 +1.2
52,031 - GFF3851 0.79 +0.4
52,031 - GFF3851 0.79 -0.5
52,031 - GFF3851 0.79 -0.5
52,031 - GFF3851 0.79 -0.1
52,031 - GFF3851 0.79 -0.0
52,031 - GFF3851 0.79 -0.6
52,165 + -0.2
52,165 + -0.1
52,166 - +0.2
52,166 - +0.1
52,166 - -2.1
52,430 + GFF3852 0.20 +0.5
52,430 + GFF3852 0.20 -0.9
52,430 + GFF3852 0.20 +0.6
52,431 - GFF3852 0.20 -0.3
52,431 - GFF3852 0.20 -1.3
52,431 - GFF3852 0.20 -1.0
52,560 + GFF3852 0.37 -2.7
52,817 + GFF3852 0.71 -0.6
52,817 + GFF3852 0.71 -0.7
52,818 - GFF3852 0.71 -1.0
52,818 - GFF3852 0.71 -0.9
52,818 - GFF3852 0.71 -1.2
52,884 + GFF3852 0.80 +0.5
52,884 + GFF3852 0.80 +0.3
52,884 + GFF3852 0.80 +0.2
52,884 + GFF3852 0.80 -0.3
52,884 + GFF3852 0.80 +0.6
52,885 - GFF3852 0.80 -1.1
52,885 - GFF3852 0.80 +0.1
53,019 + -1.1
53,019 + -0.2
53,019 + -1.3
53,019 + +0.6
53,019 + +0.5
53,019 + -0.5
53,020 - -1.7
53,020 - +0.1
53,020 - -0.3
53,020 - -0.2
53,020 - -0.5
53,020 - -0.1
53,686 + -0.5
53,686 + -0.2
53,686 + -0.8
53,789 + GFF3854 0.16 +1.0
53,789 + GFF3854 0.16 +0.2
53,789 + GFF3854 0.16 -0.8
53,789 + GFF3854 0.16 -1.0
53,790 - GFF3854 0.16 -0.1

Or see this region's nucleotide sequence