Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3824 and GFF3825 are separated by 131 nucleotides GFF3825 and GFF3826 overlap by 4 nucleotides GFF3826 and GFF3827 overlap by 4 nucleotides
GFF3824 - Argininosuccinate lyase (EC 4.3.2.1), at 13,262 to 14,659
GFF3824
GFF3825 - Autolysin sensor kinase (EC 2.7.3.-), at 14,791 to 15,789
GFF3825
GFF3826 - Response regulator receiver:LytTr DNA-binding region, at 15,786 to 16,541
GFF3826
GFF3827 - UPF0118 membrane protein SMc00793, at 16,538 to 17,818
GFF3827
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 14.681 kb on - strand at 14.681 kb on - strand at 14.701 kb on + strand at 14.702 kb on - strand at 14.702 kb on - strand at 14.702 kb on - strand at 14.702 kb on - strand at 15.026 kb on - strand, within GFF3825 at 15.026 kb on - strand, within GFF3825 at 15.064 kb on + strand, within GFF3825 at 15.064 kb on + strand, within GFF3825 at 15.064 kb on + strand, within GFF3825 at 15.064 kb on + strand, within GFF3825 at 15.065 kb on - strand, within GFF3825 at 15.065 kb on - strand, within GFF3825 at 15.406 kb on + strand, within GFF3825 at 15.714 kb on + strand at 15.715 kb on - strand at 15.715 kb on - strand at 15.715 kb on - strand at 15.715 kb on - strand at 16.099 kb on - strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.261 kb on - strand, within GFF3826 at 16.261 kb on - strand, within GFF3826 at 16.275 kb on + strand, within GFF3826 at 16.275 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.422 kb on + strand, within GFF3826 at 16.423 kb on - strand, within GFF3826 at 16.423 kb on - strand, within GFF3826 at 16.423 kb on - strand, within GFF3826
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 14,681 - +2.0 14,681 - +1.5 14,701 + -0.2 14,702 - -0.2 14,702 - +0.3 14,702 - +1.0 14,702 - -0.1 15,026 - GFF3825 0.24 +4.0 15,026 - GFF3825 0.24 +3.7 15,064 + GFF3825 0.27 +3.4 15,064 + GFF3825 0.27 +3.8 15,064 + GFF3825 0.27 +3.0 15,064 + GFF3825 0.27 +3.4 15,065 - GFF3825 0.27 +3.9 15,065 - GFF3825 0.27 +3.5 15,406 + GFF3825 0.62 +4.0 15,714 + +2.5 15,715 - +3.1 15,715 - +4.2 15,715 - +4.5 15,715 - +4.0 16,099 - GFF3826 0.41 +4.4 16,260 + GFF3826 0.63 +3.4 16,260 + GFF3826 0.63 +3.4 16,260 + GFF3826 0.63 +3.6 16,261 - GFF3826 0.63 +3.6 16,261 - GFF3826 0.63 +3.9 16,275 + GFF3826 0.65 +3.4 16,275 + GFF3826 0.65 +3.4 16,281 + GFF3826 0.65 +3.2 16,281 + GFF3826 0.65 +3.1 16,281 + GFF3826 0.65 +4.1 16,281 + GFF3826 0.65 +3.4 16,281 + GFF3826 0.65 +3.9 16,282 - GFF3826 0.66 +3.7 16,282 - GFF3826 0.66 +4.3 16,282 - GFF3826 0.66 +4.2 16,282 - GFF3826 0.66 +3.8 16,282 - GFF3826 0.66 +3.9 16,282 - GFF3826 0.66 +3.8 16,422 + GFF3826 0.84 +3.8 16,423 - GFF3826 0.84 +3.9 16,423 - GFF3826 0.84 +4.1 16,423 - GFF3826 0.84 +3.8
Or see this region's nucleotide sequence