Strain Fitness in Variovorax sp. SCN45 around GFF3782

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3780 and GFF3781 are separated by 25 nucleotidesGFF3781 and GFF3782 are separated by 86 nucleotidesGFF3782 and GFF3783 are separated by 15 nucleotides GFF3780 - hypothetical protein, at 272,761 to 273,234 GFF3780 GFF3781 - Transcriptional regulator, AcrR family, at 273,260 to 273,895 GFF3781 GFF3782 - hypothetical protein, at 273,982 to 274,767 GFF3782 GFF3783 - bifunctional P-450:NADPH-P450 reductase 1, at 274,783 to 278,007 GFF3783 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2 3at 273.392 kb on + strand, within GFF3781at 273.392 kb on + strand, within GFF3781at 273.392 kb on + strand, within GFF3781at 273.393 kb on - strand, within GFF3781at 273.393 kb on - strand, within GFF3781at 273.393 kb on - strand, within GFF3781at 273.542 kb on + strand, within GFF3781at 273.542 kb on + strand, within GFF3781at 273.554 kb on + strand, within GFF3781at 273.555 kb on - strand, within GFF3781at 273.555 kb on - strand, within GFF3781at 273.555 kb on - strand, within GFF3781at 273.812 kb on + strand, within GFF3781at 273.812 kb on + strand, within GFF3781at 273.813 kb on - strand, within GFF3781at 273.813 kb on - strand, within GFF3781at 273.836 kb on + strandat 273.837 kb on - strandat 273.837 kb on - strandat 273.837 kb on - strandat 273.860 kb on + strandat 273.860 kb on + strandat 273.860 kb on + strandat 273.860 kb on + strandat 273.860 kb on + strandat 273.861 kb on - strandat 273.861 kb on - strandat 273.861 kb on - strandat 273.870 kb on - strandat 273.884 kb on + strandat 273.884 kb on + strandat 273.884 kb on + strandat 273.885 kb on - strandat 273.885 kb on - strandat 273.885 kb on - strandat 273.885 kb on - strandat 273.893 kb on + strandat 273.894 kb on - strandat 274.192 kb on + strand, within GFF3782at 274.210 kb on + strand, within GFF3782at 274.351 kb on + strand, within GFF3782at 274.352 kb on - strand, within GFF3782at 274.376 kb on - strand, within GFF3782at 274.376 kb on - strand, within GFF3782at 274.376 kb on - strand, within GFF3782at 274.456 kb on + strand, within GFF3782at 274.456 kb on + strand, within GFF3782at 274.457 kb on - strand, within GFF3782at 274.585 kb on + strand, within GFF3782at 274.663 kb on + strand, within GFF3782at 274.664 kb on - strand, within GFF3782at 274.741 kb on + strandat 274.811 kb on + strandat 274.811 kb on + strandat 274.812 kb on - strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 275.001 kb on - strandat 275.001 kb on - strandat 275.035 kb on - strandat 275.084 kb on + strandat 275.435 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.556 kb on - strand, within GFF3783at 275.556 kb on - strand, within GFF3783at 275.556 kb on - strand, within GFF3783at 275.556 kb on - strand, within GFF3783at 275.627 kb on + strand, within GFF3783at 275.628 kb on - strand, within GFF3783at 275.681 kb on + strand, within GFF3783at 275.681 kb on + strand, within GFF3783

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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273,392 + GFF3781 0.21 +0.2
273,392 + GFF3781 0.21 +1.0
273,392 + GFF3781 0.21 -1.6
273,393 - GFF3781 0.21 -0.9
273,393 - GFF3781 0.21 +0.2
273,393 - GFF3781 0.21 -0.5
273,542 + GFF3781 0.44 +2.1
273,542 + GFF3781 0.44 +0.1
273,554 + GFF3781 0.46 -0.4
273,555 - GFF3781 0.46 -1.1
273,555 - GFF3781 0.46 -1.2
273,555 - GFF3781 0.46 +0.4
273,812 + GFF3781 0.87 +0.2
273,812 + GFF3781 0.87 +0.2
273,813 - GFF3781 0.87 +0.5
273,813 - GFF3781 0.87 +0.8
273,836 + +0.6
273,837 - -0.4
273,837 - -2.4
273,837 - -0.4
273,860 + -0.4
273,860 + +0.0
273,860 + +0.0
273,860 + +0.7
273,860 + -0.0
273,861 - -2.0
273,861 - +0.1
273,861 - -1.0
273,870 - -0.2
273,884 + +0.1
273,884 + -0.1
273,884 + -2.0
273,885 - -1.0
273,885 - +2.0
273,885 - +0.1
273,885 - +1.7
273,893 + +0.2
273,894 - -0.5
274,192 + GFF3782 0.27 -0.4
274,210 + GFF3782 0.29 +0.6
274,351 + GFF3782 0.47 -0.7
274,352 - GFF3782 0.47 -0.9
274,376 - GFF3782 0.50 +0.4
274,376 - GFF3782 0.50 -0.2
274,376 - GFF3782 0.50 +0.7
274,456 + GFF3782 0.60 -0.4
274,456 + GFF3782 0.60 +0.8
274,457 - GFF3782 0.60 -0.9
274,585 + GFF3782 0.77 +0.5
274,663 + GFF3782 0.87 +0.6
274,664 - GFF3782 0.87 +1.0
274,741 + -0.6
274,811 + +0.9
274,811 + +0.1
274,812 - +1.2
274,931 + -1.6
274,931 + -2.0
274,931 + +0.8
274,931 + -1.6
274,931 + -0.0
274,931 + +0.2
274,931 + +0.3
274,931 + +0.4
274,932 - -0.5
274,932 - +0.0
274,932 - +0.5
274,932 - -0.4
274,932 - -0.5
274,932 - -1.1
274,932 - +0.1
275,001 - -1.2
275,001 - +0.2
275,035 - -0.1
275,084 + +0.1
275,435 + GFF3783 0.20 -0.1
275,555 + GFF3783 0.24 +0.2
275,555 + GFF3783 0.24 -0.9
275,555 + GFF3783 0.24 -0.3
275,555 + GFF3783 0.24 +0.4
275,555 + GFF3783 0.24 -0.9
275,555 + GFF3783 0.24 -0.9
275,556 - GFF3783 0.24 -0.5
275,556 - GFF3783 0.24 -0.5
275,556 - GFF3783 0.24 +0.2
275,556 - GFF3783 0.24 +1.0
275,627 + GFF3783 0.26 +3.0
275,628 - GFF3783 0.26 +0.4
275,681 + GFF3783 0.28 -0.2
275,681 + GFF3783 0.28 +0.7

Or see this region's nucleotide sequence