Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3772 and GFF3773 are separated by 10 nucleotides GFF3773 and GFF3774 overlap by 4 nucleotides GFF3774 and GFF3775 overlap by 4 nucleotides GFF3775 and GFF3776 are separated by 167 nucleotides
GFF3772 - Arginase (EC 3.5.3.1), at 263,492 to 264,412
GFF3772
GFF3773 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 264,423 to 265,403
GFF3773
GFF3774 - hypothetical protein, at 265,400 to 266,797
GFF3774
GFF3775 - Two-component transcriptional response regulator, OmpR family, at 266,794 to 267,468
GFF3775
GFF3776 - no description, at 267,636 to 268,025
GFF3776
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 264.658 kb on + strand, within GFF3773 at 264.658 kb on + strand, within GFF3773 at 264.658 kb on + strand, within GFF3773 at 264.659 kb on - strand, within GFF3773 at 264.836 kb on - strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.331 kb on - strand at 265.457 kb on - strand at 265.578 kb on + strand, within GFF3774 at 265.579 kb on - strand, within GFF3774 at 265.797 kb on + strand, within GFF3774 at 266.354 kb on + strand, within GFF3774 at 266.355 kb on - strand, within GFF3774 at 266.355 kb on - strand, within GFF3774 at 266.711 kb on + strand at 267.121 kb on + strand, within GFF3775 at 267.121 kb on + strand, within GFF3775 at 267.122 kb on - strand, within GFF3775 at 267.122 kb on - strand, within GFF3775 at 267.176 kb on + strand, within GFF3775 at 267.177 kb on - strand, within GFF3775 at 267.252 kb on + strand, within GFF3775 at 267.253 kb on - strand, within GFF3775 at 267.531 kb on + strand at 267.554 kb on - strand at 267.631 kb on + strand at 267.631 kb on + strand at 267.631 kb on + strand at 267.632 kb on - strand at 267.632 kb on - strand at 267.632 kb on - strand at 267.780 kb on + strand, within GFF3776 at 267.786 kb on + strand, within GFF3776 at 267.786 kb on + strand, within GFF3776 at 267.786 kb on + strand, within GFF3776 at 267.787 kb on - strand, within GFF3776 at 267.787 kb on - strand, within GFF3776 at 267.787 kb on - strand, within GFF3776
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 264,658 + GFF3773 0.24 -0.5 264,658 + GFF3773 0.24 -1.6 264,658 + GFF3773 0.24 -0.2 264,659 - GFF3773 0.24 -0.0 264,836 - GFF3773 0.42 +0.1 264,985 + GFF3773 0.57 -1.2 264,985 + GFF3773 0.57 +1.2 264,985 + GFF3773 0.57 -0.0 264,985 + GFF3773 0.57 -0.5 264,986 - GFF3773 0.57 +1.4 264,986 - GFF3773 0.57 +0.5 264,986 - GFF3773 0.57 +0.1 264,993 + GFF3773 0.58 +0.6 264,993 + GFF3773 0.58 -3.2 264,993 + GFF3773 0.58 -0.8 264,994 - GFF3773 0.58 +0.0 264,994 - GFF3773 0.58 -0.4 264,994 - GFF3773 0.58 -1.4 264,994 - GFF3773 0.58 +0.7 264,994 - GFF3773 0.58 -1.6 265,258 + GFF3773 0.85 +1.8 265,258 + GFF3773 0.85 -0.4 265,258 + GFF3773 0.85 +0.4 265,258 + GFF3773 0.85 -0.2 265,258 + GFF3773 0.85 +1.0 265,258 + GFF3773 0.85 -0.3 265,259 - GFF3773 0.85 -0.2 265,259 - GFF3773 0.85 +0.0 265,259 - GFF3773 0.85 -0.2 265,259 - GFF3773 0.85 +1.0 265,331 - -0.1 265,457 - +0.2 265,578 + GFF3774 0.13 +1.0 265,579 - GFF3774 0.13 +0.2 265,797 + GFF3774 0.28 +0.4 266,354 + GFF3774 0.68 -0.3 266,355 - GFF3774 0.68 +1.0 266,355 - GFF3774 0.68 -0.3 266,711 + -0.1 267,121 + GFF3775 0.48 -0.1 267,121 + GFF3775 0.48 -0.4 267,122 - GFF3775 0.49 +1.1 267,122 - GFF3775 0.49 -0.2 267,176 + GFF3775 0.57 -0.3 267,177 - GFF3775 0.57 -0.0 267,252 + GFF3775 0.68 -0.3 267,253 - GFF3775 0.68 +0.1 267,531 + -0.5 267,554 - -1.0 267,631 + +0.4 267,631 + -0.0 267,631 + -0.3 267,632 - -0.0 267,632 - -0.2 267,632 - -1.2 267,780 + GFF3776 0.37 -2.9 267,786 + GFF3776 0.38 -0.5 267,786 + GFF3776 0.38 +0.1 267,786 + GFF3776 0.38 +0.1 267,787 - GFF3776 0.39 +0.1 267,787 - GFF3776 0.39 -0.1 267,787 - GFF3776 0.39 -0.3
Or see this region's nucleotide sequence