Strain Fitness in Variovorax sp. SCN45 around GFF3759

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3758 and GFF3759 are separated by 34 nucleotidesGFF3759 and GFF3760 are separated by 101 nucleotidesGFF3760 and GFF3761 are separated by 57 nucleotides GFF3758 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 251,122 to 252,396 GFF3758 GFF3759 - Uridine kinase family protein YggC homolog, at 252,431 to 253,084 GFF3759 GFF3760 - putative lipoprotein, at 253,186 to 253,875 GFF3760 GFF3761 - Transcriptional regulator, MarR family, at 253,933 to 254,409 GFF3761 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2at 251.449 kb on + strand, within GFF3758at 251.450 kb on - strand, within GFF3758at 251.527 kb on + strand, within GFF3758at 251.527 kb on + strand, within GFF3758at 251.527 kb on + strand, within GFF3758at 251.527 kb on + strand, within GFF3758at 251.527 kb on + strand, within GFF3758at 251.527 kb on + strand, within GFF3758at 251.527 kb on + strand, within GFF3758at 251.527 kb on + strand, within GFF3758at 251.626 kb on + strand, within GFF3758at 251.626 kb on + strand, within GFF3758at 251.626 kb on + strand, within GFF3758at 251.626 kb on + strand, within GFF3758at 251.626 kb on + strand, within GFF3758at 251.626 kb on + strand, within GFF3758at 251.627 kb on - strand, within GFF3758at 251.627 kb on - strand, within GFF3758at 251.627 kb on - strand, within GFF3758at 251.627 kb on - strand, within GFF3758at 251.627 kb on - strand, within GFF3758at 251.627 kb on - strand, within GFF3758at 252.193 kb on + strand, within GFF3758at 252.193 kb on + strand, within GFF3758at 252.193 kb on + strand, within GFF3758at 252.194 kb on - strand, within GFF3758at 252.194 kb on - strand, within GFF3758at 252.194 kb on - strand, within GFF3758at 252.337 kb on + strandat 252.338 kb on - strandat 252.338 kb on - strandat 252.338 kb on - strandat 252.338 kb on - strandat 252.388 kb on + strandat 252.388 kb on + strandat 252.388 kb on + strandat 252.388 kb on + strandat 252.419 kb on + strandat 252.420 kb on - strandat 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.707 kb on + strand, within GFF3759at 252.708 kb on - strand, within GFF3759at 252.708 kb on - strand, within GFF3759at 252.708 kb on - strand, within GFF3759at 252.708 kb on - strand, within GFF3759at 252.708 kb on - strand, within GFF3759at 252.708 kb on - strand, within GFF3759at 252.708 kb on - strand, within GFF3759at 252.761 kb on + strand, within GFF3759at 252.761 kb on + strand, within GFF3759at 252.762 kb on - strand, within GFF3759at 252.762 kb on - strand, within GFF3759at 252.762 kb on - strand, within GFF3759at 252.762 kb on - strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.854 kb on + strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.855 kb on - strand, within GFF3759at 252.914 kb on + strand, within GFF3759at 252.914 kb on + strand, within GFF3759at 252.914 kb on + strand, within GFF3759at 252.914 kb on + strand, within GFF3759at 252.914 kb on + strand, within GFF3759at 252.915 kb on - strand, within GFF3759at 252.915 kb on - strand, within GFF3759at 252.915 kb on - strand, within GFF3759at 252.915 kb on - strand, within GFF3759at 252.915 kb on - strand, within GFF3759at 252.915 kb on - strand, within GFF3759at 252.915 kb on - strand, within GFF3759at 252.915 kb on - strand, within GFF3759at 253.170 kb on + strandat 253.170 kb on + strandat 253.171 kb on - strandat 253.303 kb on + strand, within GFF3760at 253.303 kb on + strand, within GFF3760at 253.303 kb on + strand, within GFF3760at 253.303 kb on + strand, within GFF3760at 253.303 kb on + strand, within GFF3760at 253.303 kb on + strand, within GFF3760at 253.303 kb on + strand, within GFF3760at 253.304 kb on - strand, within GFF3760at 253.304 kb on - strand, within GFF3760at 253.304 kb on - strand, within GFF3760at 253.304 kb on - strand, within GFF3760at 253.304 kb on - strand, within GFF3760at 253.348 kb on + strand, within GFF3760at 253.348 kb on + strand, within GFF3760at 253.348 kb on + strand, within GFF3760at 253.348 kb on + strand, within GFF3760at 253.349 kb on - strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.582 kb on + strand, within GFF3760at 253.583 kb on - strand, within GFF3760at 253.714 kb on + strand, within GFF3760at 253.714 kb on + strand, within GFF3760at 253.714 kb on + strand, within GFF3760at 253.714 kb on + strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.844 kb on - strandat 253.844 kb on - strandat 253.844 kb on - strandat 253.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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251,449 + GFF3758 0.26 +0.1
251,450 - GFF3758 0.26 +1.0
251,527 + GFF3758 0.32 -0.6
251,527 + GFF3758 0.32 -0.3
251,527 + GFF3758 0.32 -0.7
251,527 + GFF3758 0.32 +0.3
251,527 + GFF3758 0.32 -1.4
251,527 + GFF3758 0.32 -0.4
251,527 + GFF3758 0.32 +0.4
251,527 + GFF3758 0.32 -0.2
251,626 + GFF3758 0.40 -0.9
251,626 + GFF3758 0.40 +0.3
251,626 + GFF3758 0.40 -0.0
251,626 + GFF3758 0.40 -2.3
251,626 + GFF3758 0.40 -0.5
251,626 + GFF3758 0.40 -0.0
251,627 - GFF3758 0.40 -0.9
251,627 - GFF3758 0.40 -0.0
251,627 - GFF3758 0.40 -1.4
251,627 - GFF3758 0.40 -0.1
251,627 - GFF3758 0.40 -0.7
251,627 - GFF3758 0.40 -0.8
252,193 + GFF3758 0.84 -0.1
252,193 + GFF3758 0.84 +0.1
252,193 + GFF3758 0.84 -1.2
252,194 - GFF3758 0.84 -0.7
252,194 - GFF3758 0.84 -0.6
252,194 - GFF3758 0.84 -0.7
252,337 + -0.0
252,338 - -2.1
252,338 - -0.1
252,338 - -0.4
252,338 - -1.0
252,388 + -0.7
252,388 + +0.5
252,388 + -0.4
252,388 + -0.0
252,419 + +0.5
252,420 - +0.1
252,707 + GFF3759 0.42 +0.5
252,707 + GFF3759 0.42 +1.5
252,707 + GFF3759 0.42 +0.4
252,707 + GFF3759 0.42 +0.2
252,707 + GFF3759 0.42 +0.6
252,707 + GFF3759 0.42 +0.2
252,707 + GFF3759 0.42 -0.6
252,707 + GFF3759 0.42 +0.2
252,707 + GFF3759 0.42 -1.0
252,707 + GFF3759 0.42 +0.1
252,707 + GFF3759 0.42 -0.4
252,707 + GFF3759 0.42 -0.9
252,707 + GFF3759 0.42 -1.0
252,708 - GFF3759 0.42 -0.0
252,708 - GFF3759 0.42 -1.3
252,708 - GFF3759 0.42 -1.0
252,708 - GFF3759 0.42 -0.2
252,708 - GFF3759 0.42 +0.6
252,708 - GFF3759 0.42 +0.7
252,708 - GFF3759 0.42 -1.7
252,761 + GFF3759 0.50 -0.6
252,761 + GFF3759 0.50 -0.0
252,762 - GFF3759 0.51 +1.1
252,762 - GFF3759 0.51 -1.2
252,762 - GFF3759 0.51 -0.5
252,762 - GFF3759 0.51 +1.6
252,854 + GFF3759 0.65 -0.5
252,854 + GFF3759 0.65 -0.1
252,854 + GFF3759 0.65 -0.3
252,854 + GFF3759 0.65 -0.2
252,854 + GFF3759 0.65 +0.9
252,854 + GFF3759 0.65 -0.6
252,854 + GFF3759 0.65 -0.1
252,854 + GFF3759 0.65 -0.2
252,854 + GFF3759 0.65 -0.4
252,854 + GFF3759 0.65 -1.0
252,854 + GFF3759 0.65 -1.4
252,854 + GFF3759 0.65 -0.0
252,854 + GFF3759 0.65 +0.3
252,855 - GFF3759 0.65 -1.0
252,855 - GFF3759 0.65 -0.6
252,855 - GFF3759 0.65 -1.0
252,855 - GFF3759 0.65 -0.2
252,855 - GFF3759 0.65 -0.5
252,855 - GFF3759 0.65 -0.5
252,855 - GFF3759 0.65 -0.5
252,855 - GFF3759 0.65 -0.3
252,855 - GFF3759 0.65 -0.0
252,855 - GFF3759 0.65 -0.2
252,855 - GFF3759 0.65 -0.2
252,855 - GFF3759 0.65 +0.5
252,855 - GFF3759 0.65 -0.5
252,855 - GFF3759 0.65 -0.9
252,855 - GFF3759 0.65 -0.3
252,855 - GFF3759 0.65 +0.6
252,914 + GFF3759 0.74 +0.2
252,914 + GFF3759 0.74 +1.0
252,914 + GFF3759 0.74 -0.8
252,914 + GFF3759 0.74 +0.2
252,914 + GFF3759 0.74 +0.1
252,915 - GFF3759 0.74 +1.0
252,915 - GFF3759 0.74 +0.6
252,915 - GFF3759 0.74 -0.9
252,915 - GFF3759 0.74 -2.4
252,915 - GFF3759 0.74 -0.1
252,915 - GFF3759 0.74 -0.2
252,915 - GFF3759 0.74 +2.0
252,915 - GFF3759 0.74 -0.4
253,170 + +0.3
253,170 + +0.7
253,171 - -0.5
253,303 + GFF3760 0.17 -0.7
253,303 + GFF3760 0.17 -0.4
253,303 + GFF3760 0.17 +0.4
253,303 + GFF3760 0.17 -1.3
253,303 + GFF3760 0.17 +1.5
253,303 + GFF3760 0.17 +0.1
253,303 + GFF3760 0.17 -0.9
253,304 - GFF3760 0.17 -0.9
253,304 - GFF3760 0.17 -0.5
253,304 - GFF3760 0.17 -0.9
253,304 - GFF3760 0.17 -1.1
253,304 - GFF3760 0.17 +0.1
253,348 + GFF3760 0.23 +0.3
253,348 + GFF3760 0.23 -0.3
253,348 + GFF3760 0.23 -0.3
253,348 + GFF3760 0.23 -0.3
253,349 - GFF3760 0.24 -1.4
253,408 + GFF3760 0.32 -0.0
253,408 + GFF3760 0.32 +0.6
253,408 + GFF3760 0.32 -1.9
253,408 + GFF3760 0.32 -0.4
253,408 + GFF3760 0.32 +0.1
253,408 + GFF3760 0.32 -0.5
253,408 + GFF3760 0.32 -0.0
253,408 + GFF3760 0.32 -0.6
253,408 + GFF3760 0.32 -1.9
253,408 + GFF3760 0.32 -0.4
253,408 + GFF3760 0.32 +0.1
253,408 + GFF3760 0.32 +1.4
253,409 - GFF3760 0.32 -2.0
253,409 - GFF3760 0.32 -1.0
253,409 - GFF3760 0.32 -0.2
253,409 - GFF3760 0.32 +0.0
253,409 - GFF3760 0.32 -0.0
253,409 - GFF3760 0.32 -0.1
253,409 - GFF3760 0.32 -0.0
253,409 - GFF3760 0.32 -0.5
253,409 - GFF3760 0.32 -0.9
253,582 + GFF3760 0.57 -0.1
253,583 - GFF3760 0.58 -0.9
253,714 + GFF3760 0.77 -0.8
253,714 + GFF3760 0.77 -0.6
253,714 + GFF3760 0.77 -0.2
253,714 + GFF3760 0.77 -0.8
253,715 - GFF3760 0.77 -0.2
253,715 - GFF3760 0.77 +1.0
253,715 - GFF3760 0.77 +1.0
253,715 - GFF3760 0.77 -0.2
253,715 - GFF3760 0.77 +1.6
253,715 - GFF3760 0.77 +0.2
253,715 - GFF3760 0.77 +0.7
253,843 + +0.6
253,843 + -0.4
253,843 + -0.0
253,843 + +0.9
253,843 + +0.3
253,843 + -0.6
253,843 + -0.0
253,844 - +0.7
253,844 - -0.6
253,844 - +0.6
253,844 - -0.0

Or see this region's nucleotide sequence