Strain Fitness in Variovorax sp. SCN45 around GFF3747

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3745 and GFF3746 are separated by 10 nucleotidesGFF3746 and GFF3747 overlap by 4 nucleotidesGFF3747 and GFF3748 are separated by 7 nucleotidesGFF3748 and GFF3749 are separated by 72 nucleotides GFF3745 - Uncharacterized UPF0721 integral membrane protein, at 241,073 to 241,813 GFF3745 GFF3746 - Probable NADH dehydrogenase/NAD(P)H nitroreductase, at 241,824 to 242,414 GFF3746 GFF3747 - putative esterase, at 242,411 to 243,253 GFF3747 GFF3748 - KEGG: dihydrodipicolinate synthase , at 243,261 to 244,118 GFF3748 GFF3749 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 244,191 to 244,997 GFF3749 Position (kb) 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2 3at 241.650 kb on + strand, within GFF3745at 241.650 kb on + strand, within GFF3745at 241.651 kb on - strand, within GFF3745at 241.651 kb on - strand, within GFF3745at 241.651 kb on - strand, within GFF3745at 242.024 kb on - strand, within GFF3746at 242.314 kb on + strand, within GFF3746at 242.314 kb on + strand, within GFF3746at 242.315 kb on - strand, within GFF3746at 242.315 kb on - strand, within GFF3746at 242.315 kb on - strand, within GFF3746at 242.571 kb on + strand, within GFF3747at 242.571 kb on + strand, within GFF3747at 242.571 kb on + strand, within GFF3747at 242.572 kb on - strand, within GFF3747at 242.733 kb on + strand, within GFF3747at 242.734 kb on - strand, within GFF3747at 242.937 kb on + strand, within GFF3747at 242.937 kb on + strand, within GFF3747at 242.937 kb on + strand, within GFF3747at 242.938 kb on - strand, within GFF3747at 242.959 kb on - strand, within GFF3747at 243.022 kb on - strand, within GFF3747at 243.022 kb on - strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.036 kb on + strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.037 kb on - strand, within GFF3747at 243.105 kb on + strand, within GFF3747at 243.183 kb on + strandat 243.184 kb on - strandat 243.184 kb on - strandat 243.210 kb on + strandat 243.210 kb on + strandat 243.210 kb on + strandat 243.210 kb on + strandat 243.211 kb on - strandat 243.211 kb on - strandat 243.487 kb on + strand, within GFF3748at 243.487 kb on + strand, within GFF3748at 243.487 kb on + strand, within GFF3748at 243.487 kb on + strand, within GFF3748at 243.487 kb on + strand, within GFF3748at 243.487 kb on + strand, within GFF3748at 243.487 kb on + strand, within GFF3748at 243.488 kb on - strand, within GFF3748at 243.488 kb on - strand, within GFF3748at 243.488 kb on - strand, within GFF3748at 243.488 kb on - strand, within GFF3748at 243.488 kb on - strand, within GFF3748at 243.488 kb on - strand, within GFF3748at 243.488 kb on - strand, within GFF3748at 243.622 kb on + strand, within GFF3748at 243.745 kb on + strand, within GFF3748at 243.745 kb on + strand, within GFF3748at 243.746 kb on - strand, within GFF3748at 243.746 kb on - strand, within GFF3748at 243.788 kb on - strand, within GFF3748at 243.788 kb on - strand, within GFF3748at 243.788 kb on - strand, within GFF3748at 243.826 kb on + strand, within GFF3748at 243.826 kb on + strand, within GFF3748at 243.827 kb on - strand, within GFF3748at 243.923 kb on - strand, within GFF3748at 243.923 kb on - strand, within GFF3748at 244.051 kb on + strandat 244.051 kb on + strandat 244.051 kb on + strandat 244.051 kb on + strandat 244.051 kb on + strandat 244.052 kb on - strandat 244.052 kb on - strandat 244.052 kb on - strandat 244.052 kb on - strandat 244.052 kb on - strandat 244.052 kb on - strandat 244.052 kb on - strandat 244.143 kb on - strandat 244.228 kb on + strandat 244.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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241,650 + GFF3745 0.78 -0.4
241,650 + GFF3745 0.78 -1.9
241,651 - GFF3745 0.78 +0.2
241,651 - GFF3745 0.78 -1.2
241,651 - GFF3745 0.78 +0.5
242,024 - GFF3746 0.34 -0.5
242,314 + GFF3746 0.83 -0.0
242,314 + GFF3746 0.83 +0.8
242,315 - GFF3746 0.83 -0.2
242,315 - GFF3746 0.83 -0.2
242,315 - GFF3746 0.83 +1.7
242,571 + GFF3747 0.19 -0.5
242,571 + GFF3747 0.19 -0.3
242,571 + GFF3747 0.19 -0.5
242,572 - GFF3747 0.19 +3.0
242,733 + GFF3747 0.38 -1.6
242,734 - GFF3747 0.38 +0.5
242,937 + GFF3747 0.62 -0.2
242,937 + GFF3747 0.62 -1.4
242,937 + GFF3747 0.62 +0.1
242,938 - GFF3747 0.63 -0.1
242,959 - GFF3747 0.65 -0.6
243,022 - GFF3747 0.72 -0.7
243,022 - GFF3747 0.72 -0.3
243,036 + GFF3747 0.74 +0.6
243,036 + GFF3747 0.74 +1.6
243,036 + GFF3747 0.74 -1.0
243,036 + GFF3747 0.74 +0.3
243,036 + GFF3747 0.74 -0.3
243,036 + GFF3747 0.74 -0.4
243,036 + GFF3747 0.74 -0.0
243,036 + GFF3747 0.74 +0.2
243,036 + GFF3747 0.74 -0.6
243,037 - GFF3747 0.74 -0.3
243,037 - GFF3747 0.74 -0.8
243,037 - GFF3747 0.74 -0.7
243,037 - GFF3747 0.74 -0.5
243,037 - GFF3747 0.74 -1.1
243,037 - GFF3747 0.74 -2.0
243,037 - GFF3747 0.74 +0.5
243,037 - GFF3747 0.74 -0.9
243,037 - GFF3747 0.74 -0.7
243,037 - GFF3747 0.74 +0.0
243,037 - GFF3747 0.74 -0.3
243,037 - GFF3747 0.74 -1.0
243,037 - GFF3747 0.74 -0.0
243,037 - GFF3747 0.74 +0.4
243,105 + GFF3747 0.82 -1.2
243,183 + -0.8
243,184 - -0.5
243,184 - -0.4
243,210 + -0.6
243,210 + -0.8
243,210 + -1.9
243,210 + +0.2
243,211 - -0.7
243,211 - +0.7
243,487 + GFF3748 0.26 -0.1
243,487 + GFF3748 0.26 -0.5
243,487 + GFF3748 0.26 +0.2
243,487 + GFF3748 0.26 -1.0
243,487 + GFF3748 0.26 -1.3
243,487 + GFF3748 0.26 -1.1
243,487 + GFF3748 0.26 -1.4
243,488 - GFF3748 0.26 -0.4
243,488 - GFF3748 0.26 +0.1
243,488 - GFF3748 0.26 -1.1
243,488 - GFF3748 0.26 -1.6
243,488 - GFF3748 0.26 -1.2
243,488 - GFF3748 0.26 -0.3
243,488 - GFF3748 0.26 -0.4
243,622 + GFF3748 0.42 -0.5
243,745 + GFF3748 0.56 -0.6
243,745 + GFF3748 0.56 -0.3
243,746 - GFF3748 0.57 -0.2
243,746 - GFF3748 0.57 -0.3
243,788 - GFF3748 0.61 -0.5
243,788 - GFF3748 0.61 +0.6
243,788 - GFF3748 0.61 +1.7
243,826 + GFF3748 0.66 -1.6
243,826 + GFF3748 0.66 +0.0
243,827 - GFF3748 0.66 -0.2
243,923 - GFF3748 0.77 +1.2
243,923 - GFF3748 0.77 -0.6
244,051 + -0.2
244,051 + +1.2
244,051 + +1.1
244,051 + +0.1
244,051 + -0.4
244,052 - +1.2
244,052 - -1.0
244,052 - +0.8
244,052 - +0.1
244,052 - -1.1
244,052 - +1.7
244,052 - -1.4
244,143 - +0.0
244,228 + -0.2
244,229 - -1.5

Or see this region's nucleotide sequence