Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3697 and GFF3698 overlap by 4 nucleotides GFF3698 and GFF3699 are separated by 22 nucleotides GFF3699 and GFF3700 are separated by 59 nucleotides
GFF3697 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 196,378 to 198,033
GFF3697
GFF3698 - ATP-dependent, 3'-5' DNA helicase with strand annealing activity, at 198,030 to 200,786
GFF3698
GFF3699 - Thioredoxin 2, at 200,809 to 201,258
GFF3699
GFF3700 - FIG006285: hypothetical protein, at 201,318 to 202,016
GFF3700
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -1
0
1 at 197.368 kb on + strand, within GFF3697 at 197.369 kb on - strand, within GFF3697 at 197.369 kb on - strand, within GFF3697 at 197.369 kb on - strand, within GFF3697 at 197.584 kb on + strand, within GFF3697 at 197.711 kb on - strand, within GFF3697 at 197.711 kb on - strand, within GFF3697 at 197.711 kb on - strand, within GFF3697 at 197.780 kb on - strand, within GFF3697 at 198.118 kb on + strand at 198.119 kb on - strand at 198.122 kb on + strand at 198.123 kb on - strand at 198.315 kb on + strand, within GFF3698 at 198.315 kb on + strand, within GFF3698 at 198.316 kb on - strand, within GFF3698 at 198.316 kb on - strand, within GFF3698 at 198.316 kb on - strand, within GFF3698 at 198.316 kb on - strand, within GFF3698 at 198.997 kb on - strand, within GFF3698 at 198.997 kb on - strand, within GFF3698 at 199.431 kb on + strand, within GFF3698 at 199.431 kb on + strand, within GFF3698 at 199.432 kb on - strand, within GFF3698 at 199.432 kb on - strand, within GFF3698 at 199.905 kb on + strand, within GFF3698 at 199.905 kb on + strand, within GFF3698 at 199.906 kb on - strand, within GFF3698 at 199.942 kb on + strand, within GFF3698 at 199.942 kb on + strand, within GFF3698 at 199.942 kb on + strand, within GFF3698 at 199.942 kb on + strand, within GFF3698 at 200.136 kb on + strand, within GFF3698 at 200.412 kb on + strand, within GFF3698 at 200.413 kb on - strand, within GFF3698 at 200.413 kb on - strand, within GFF3698 at 201.483 kb on + strand, within GFF3700
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 197,368 + GFF3697 0.60 -1.6 197,369 - GFF3697 0.60 +0.1 197,369 - GFF3697 0.60 +1.1 197,369 - GFF3697 0.60 -0.8 197,584 + GFF3697 0.73 +0.0 197,711 - GFF3697 0.80 +0.5 197,711 - GFF3697 0.80 +0.2 197,711 - GFF3697 0.80 +0.1 197,780 - GFF3697 0.85 +0.3 198,118 + -0.2 198,119 - -1.2 198,122 + +0.4 198,123 - -0.3 198,315 + GFF3698 0.10 +0.4 198,315 + GFF3698 0.10 -0.9 198,316 - GFF3698 0.10 +1.0 198,316 - GFF3698 0.10 -0.0 198,316 - GFF3698 0.10 -1.2 198,316 - GFF3698 0.10 -1.4 198,997 - GFF3698 0.35 -0.3 198,997 - GFF3698 0.35 +1.1 199,431 + GFF3698 0.51 -0.1 199,431 + GFF3698 0.51 -0.2 199,432 - GFF3698 0.51 +0.1 199,432 - GFF3698 0.51 +0.4 199,905 + GFF3698 0.68 -0.9 199,905 + GFF3698 0.68 -0.0 199,906 - GFF3698 0.68 -0.9 199,942 + GFF3698 0.69 +0.4 199,942 + GFF3698 0.69 -0.4 199,942 + GFF3698 0.69 -1.0 199,942 + GFF3698 0.69 +0.7 200,136 + GFF3698 0.76 -1.4 200,412 + GFF3698 0.86 -1.2 200,413 - GFF3698 0.86 +0.4 200,413 - GFF3698 0.86 -0.3 201,483 + GFF3700 0.24 +0.1
Or see this region's nucleotide sequence