Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3696 and GFF3697 overlap by 4 nucleotides GFF3697 and GFF3698 overlap by 4 nucleotides
GFF3696 - mRNA 3-end processing factor, at 195,299 to 196,381
GFF3696
GFF3697 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 196,378 to 198,033
GFF3697
GFF3698 - ATP-dependent, 3'-5' DNA helicase with strand annealing activity, at 198,030 to 200,786
GFF3698
Position (kb) 196
197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.452 kb on + strand, within GFF3696 at 195.453 kb on - strand, within GFF3696 at 195.453 kb on - strand, within GFF3696 at 195.527 kb on + strand, within GFF3696 at 195.528 kb on - strand, within GFF3696 at 195.528 kb on - strand, within GFF3696 at 195.647 kb on + strand, within GFF3696 at 195.648 kb on - strand, within GFF3696 at 195.648 kb on - strand, within GFF3696 at 195.830 kb on + strand, within GFF3696 at 195.831 kb on - strand, within GFF3696 at 195.831 kb on - strand, within GFF3696 at 195.831 kb on - strand, within GFF3696 at 195.927 kb on - strand, within GFF3696 at 196.064 kb on + strand, within GFF3696 at 196.290 kb on - strand at 196.399 kb on + strand at 196.457 kb on - strand at 196.457 kb on - strand at 196.457 kb on - strand at 196.498 kb on + strand at 196.499 kb on - strand at 196.603 kb on + strand, within GFF3697 at 196.603 kb on + strand, within GFF3697 at 196.603 kb on + strand, within GFF3697 at 196.801 kb on + strand, within GFF3697 at 196.801 kb on + strand, within GFF3697 at 196.802 kb on - strand, within GFF3697 at 196.802 kb on - strand, within GFF3697 at 196.918 kb on + strand, within GFF3697 at 196.918 kb on + strand, within GFF3697 at 197.368 kb on + strand, within GFF3697 at 197.369 kb on - strand, within GFF3697 at 197.369 kb on - strand, within GFF3697 at 197.369 kb on - strand, within GFF3697 at 197.584 kb on + strand, within GFF3697 at 197.711 kb on - strand, within GFF3697 at 197.711 kb on - strand, within GFF3697 at 197.711 kb on - strand, within GFF3697 at 197.780 kb on - strand, within GFF3697 at 198.118 kb on + strand at 198.119 kb on - strand at 198.122 kb on + strand at 198.123 kb on - strand at 198.315 kb on + strand, within GFF3698 at 198.315 kb on + strand, within GFF3698 at 198.316 kb on - strand, within GFF3698 at 198.316 kb on - strand, within GFF3698 at 198.316 kb on - strand, within GFF3698 at 198.316 kb on - strand, within GFF3698 at 198.997 kb on - strand, within GFF3698 at 198.997 kb on - strand, within GFF3698
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 195,452 + GFF3696 0.14 -0.4 195,453 - GFF3696 0.14 +0.3 195,453 - GFF3696 0.14 -3.2 195,527 + GFF3696 0.21 +0.0 195,528 - GFF3696 0.21 +0.5 195,528 - GFF3696 0.21 +1.4 195,647 + GFF3696 0.32 -2.1 195,648 - GFF3696 0.32 -1.0 195,648 - GFF3696 0.32 -1.4 195,830 + GFF3696 0.49 -0.5 195,831 - GFF3696 0.49 +0.1 195,831 - GFF3696 0.49 -0.0 195,831 - GFF3696 0.49 +0.6 195,927 - GFF3696 0.58 +1.6 196,064 + GFF3696 0.71 +0.1 196,290 - -1.5 196,399 + -0.6 196,457 - +0.4 196,457 - -0.4 196,457 - -0.3 196,498 + -0.2 196,499 - -1.9 196,603 + GFF3697 0.14 -0.0 196,603 + GFF3697 0.14 -2.2 196,603 + GFF3697 0.14 +0.5 196,801 + GFF3697 0.26 +0.4 196,801 + GFF3697 0.26 +2.0 196,802 - GFF3697 0.26 +0.4 196,802 - GFF3697 0.26 -0.4 196,918 + GFF3697 0.33 -0.4 196,918 + GFF3697 0.33 -0.7 197,368 + GFF3697 0.60 -1.6 197,369 - GFF3697 0.60 +0.1 197,369 - GFF3697 0.60 +1.1 197,369 - GFF3697 0.60 -0.8 197,584 + GFF3697 0.73 +0.0 197,711 - GFF3697 0.80 +0.5 197,711 - GFF3697 0.80 +0.2 197,711 - GFF3697 0.80 +0.1 197,780 - GFF3697 0.85 +0.3 198,118 + -0.2 198,119 - -1.2 198,122 + +0.4 198,123 - -0.3 198,315 + GFF3698 0.10 +0.4 198,315 + GFF3698 0.10 -0.9 198,316 - GFF3698 0.10 +1.0 198,316 - GFF3698 0.10 -0.0 198,316 - GFF3698 0.10 -1.2 198,316 - GFF3698 0.10 -1.4 198,997 - GFF3698 0.35 -0.3 198,997 - GFF3698 0.35 +1.1
Or see this region's nucleotide sequence