Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3661 and GFF3662 are separated by 33 nucleotides GFF3662 and GFF3663 are separated by 79 nucleotides GFF3663 and GFF3664 are separated by 73 nucleotides GFF3664 and GFF3665 are separated by 48 nucleotides
GFF3661 - Putative oxidoreductase YncB, at 163,195 to 164,238
GFF3661
GFF3662 - hypothetical protein, at 164,272 to 164,589
GFF3662
GFF3663 - Permease of the drug/metabolite transporter (DMT) superfamily, at 164,669 to 165,514
GFF3663
GFF3664 - Transcriptional regulator, AraC family, at 165,588 to 166,295
GFF3664
GFF3665 - no description, at 166,344 to 166,898
GFF3665
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 163.810 kb on + strand, within GFF3661 at 163.810 kb on + strand, within GFF3661 at 163.810 kb on + strand, within GFF3661 at 163.810 kb on + strand, within GFF3661 at 163.810 kb on + strand, within GFF3661 at 163.811 kb on - strand, within GFF3661 at 163.811 kb on - strand, within GFF3661 at 163.811 kb on - strand, within GFF3661 at 163.811 kb on - strand, within GFF3661 at 163.876 kb on + strand, within GFF3661 at 163.876 kb on + strand, within GFF3661 at 163.876 kb on + strand, within GFF3661 at 163.877 kb on - strand, within GFF3661 at 163.877 kb on - strand, within GFF3661 at 163.877 kb on - strand, within GFF3661 at 163.877 kb on - strand, within GFF3661 at 163.969 kb on + strand, within GFF3661 at 163.969 kb on + strand, within GFF3661 at 163.969 kb on + strand, within GFF3661 at 163.969 kb on + strand, within GFF3661 at 163.969 kb on + strand, within GFF3661 at 163.969 kb on + strand, within GFF3661 at 163.969 kb on + strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 163.970 kb on - strand, within GFF3661 at 164.011 kb on + strand, within GFF3661 at 164.011 kb on + strand, within GFF3661 at 164.011 kb on + strand, within GFF3661 at 164.011 kb on + strand, within GFF3661 at 164.011 kb on + strand, within GFF3661 at 164.012 kb on - strand, within GFF3661 at 164.012 kb on - strand, within GFF3661 at 164.012 kb on - strand, within GFF3661 at 164.012 kb on - strand, within GFF3661 at 164.065 kb on + strand, within GFF3661 at 164.066 kb on - strand, within GFF3661 at 164.108 kb on - strand, within GFF3661 at 164.138 kb on - strand at 164.477 kb on + strand, within GFF3662 at 164.477 kb on + strand, within GFF3662 at 164.478 kb on - strand, within GFF3662 at 164.522 kb on + strand, within GFF3662 at 164.522 kb on + strand, within GFF3662 at 164.523 kb on - strand, within GFF3662 at 164.523 kb on - strand, within GFF3662 at 164.523 kb on - strand, within GFF3662 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.793 kb on + strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 164.794 kb on - strand, within GFF3663 at 165.030 kb on + strand, within GFF3663 at 165.030 kb on + strand, within GFF3663 at 165.030 kb on + strand, within GFF3663 at 165.030 kb on + strand, within GFF3663 at 165.030 kb on + strand, within GFF3663 at 165.030 kb on + strand, within GFF3663 at 165.030 kb on + strand, within GFF3663 at 165.030 kb on + strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.031 kb on - strand, within GFF3663 at 165.078 kb on + strand, within GFF3663 at 165.078 kb on + strand, within GFF3663 at 165.078 kb on + strand, within GFF3663 at 165.078 kb on + strand, within GFF3663 at 165.078 kb on + strand, within GFF3663 at 165.078 kb on + strand, within GFF3663 at 165.078 kb on + strand, within GFF3663 at 165.079 kb on - strand, within GFF3663 at 165.079 kb on - strand, within GFF3663 at 165.079 kb on - strand, within GFF3663 at 165.079 kb on - strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.237 kb on + strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.238 kb on - strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.315 kb on + strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.316 kb on - strand, within GFF3663 at 165.976 kb on + strand, within GFF3664 at 165.976 kb on + strand, within GFF3664 at 165.976 kb on + strand, within GFF3664 at 165.976 kb on + strand, within GFF3664 at 165.976 kb on + strand, within GFF3664 at 165.976 kb on + strand, within GFF3664 at 165.976 kb on + strand, within GFF3664 at 165.977 kb on - strand, within GFF3664 at 165.977 kb on - strand, within GFF3664 at 165.977 kb on - strand, within GFF3664 at 165.977 kb on - strand, within GFF3664 at 166.446 kb on + strand, within GFF3665 at 166.446 kb on + strand, within GFF3665 at 166.447 kb on - strand, within GFF3665 at 166.447 kb on - strand, within GFF3665 at 166.447 kb on - strand, within GFF3665
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 163,810 + GFF3661 0.59 +0.5 163,810 + GFF3661 0.59 +0.1 163,810 + GFF3661 0.59 +0.1 163,810 + GFF3661 0.59 +0.0 163,810 + GFF3661 0.59 -1.2 163,811 - GFF3661 0.59 -1.9 163,811 - GFF3661 0.59 -0.9 163,811 - GFF3661 0.59 -0.0 163,811 - GFF3661 0.59 -3.0 163,876 + GFF3661 0.65 -1.0 163,876 + GFF3661 0.65 -0.4 163,876 + GFF3661 0.65 +0.2 163,877 - GFF3661 0.65 -1.4 163,877 - GFF3661 0.65 -0.4 163,877 - GFF3661 0.65 -0.9 163,877 - GFF3661 0.65 +0.6 163,969 + GFF3661 0.74 -0.6 163,969 + GFF3661 0.74 -0.7 163,969 + GFF3661 0.74 -0.2 163,969 + GFF3661 0.74 +0.4 163,969 + GFF3661 0.74 -0.3 163,969 + GFF3661 0.74 -0.3 163,969 + GFF3661 0.74 -0.4 163,970 - GFF3661 0.74 -0.6 163,970 - GFF3661 0.74 +0.1 163,970 - GFF3661 0.74 +0.1 163,970 - GFF3661 0.74 -0.5 163,970 - GFF3661 0.74 -0.7 163,970 - GFF3661 0.74 -0.3 163,970 - GFF3661 0.74 -0.8 163,970 - GFF3661 0.74 +3.0 163,970 - GFF3661 0.74 -0.6 164,011 + GFF3661 0.78 -0.4 164,011 + GFF3661 0.78 -0.6 164,011 + GFF3661 0.78 -0.6 164,011 + GFF3661 0.78 +0.4 164,011 + GFF3661 0.78 +0.1 164,012 - GFF3661 0.78 -0.6 164,012 - GFF3661 0.78 -2.5 164,012 - GFF3661 0.78 +1.3 164,012 - GFF3661 0.78 -0.7 164,065 + GFF3661 0.83 -1.2 164,066 - GFF3661 0.83 -0.8 164,108 - GFF3661 0.87 -0.6 164,138 - -1.1 164,477 + GFF3662 0.64 -1.0 164,477 + GFF3662 0.64 -0.6 164,478 - GFF3662 0.65 -1.4 164,522 + GFF3662 0.79 +0.7 164,522 + GFF3662 0.79 -0.1 164,523 - GFF3662 0.79 -0.2 164,523 - GFF3662 0.79 +0.0 164,523 - GFF3662 0.79 +1.0 164,793 + GFF3663 0.15 +1.5 164,793 + GFF3663 0.15 -1.0 164,793 + GFF3663 0.15 -0.4 164,793 + GFF3663 0.15 -0.7 164,793 + GFF3663 0.15 -0.6 164,793 + GFF3663 0.15 +0.1 164,793 + GFF3663 0.15 +1.0 164,793 + GFF3663 0.15 -0.1 164,793 + GFF3663 0.15 -0.8 164,793 + GFF3663 0.15 +0.2 164,793 + GFF3663 0.15 +1.0 164,793 + GFF3663 0.15 -0.9 164,794 - GFF3663 0.15 -0.7 164,794 - GFF3663 0.15 +0.0 164,794 - GFF3663 0.15 +1.0 164,794 - GFF3663 0.15 -0.3 164,794 - GFF3663 0.15 -0.4 164,794 - GFF3663 0.15 +0.2 164,794 - GFF3663 0.15 +0.6 164,794 - GFF3663 0.15 -0.7 164,794 - GFF3663 0.15 -0.6 164,794 - GFF3663 0.15 -1.7 164,794 - GFF3663 0.15 -0.7 164,794 - GFF3663 0.15 +0.2 164,794 - GFF3663 0.15 -0.2 164,794 - GFF3663 0.15 -1.5 164,794 - GFF3663 0.15 -1.0 164,794 - GFF3663 0.15 -0.9 165,030 + GFF3663 0.43 -1.6 165,030 + GFF3663 0.43 -0.9 165,030 + GFF3663 0.43 -0.2 165,030 + GFF3663 0.43 -0.5 165,030 + GFF3663 0.43 -0.0 165,030 + GFF3663 0.43 -1.0 165,030 + GFF3663 0.43 -1.0 165,030 + GFF3663 0.43 -0.6 165,031 - GFF3663 0.43 -0.4 165,031 - GFF3663 0.43 +0.4 165,031 - GFF3663 0.43 +0.4 165,031 - GFF3663 0.43 -0.7 165,031 - GFF3663 0.43 +0.0 165,031 - GFF3663 0.43 -0.2 165,031 - GFF3663 0.43 -1.5 165,031 - GFF3663 0.43 -0.2 165,031 - GFF3663 0.43 +0.4 165,031 - GFF3663 0.43 -0.6 165,078 + GFF3663 0.48 +0.1 165,078 + GFF3663 0.48 -0.0 165,078 + GFF3663 0.48 -1.0 165,078 + GFF3663 0.48 -0.4 165,078 + GFF3663 0.48 -0.5 165,078 + GFF3663 0.48 -0.3 165,078 + GFF3663 0.48 +0.3 165,079 - GFF3663 0.48 -0.3 165,079 - GFF3663 0.48 -0.3 165,079 - GFF3663 0.48 +0.1 165,079 - GFF3663 0.48 -1.1 165,237 + GFF3663 0.67 -1.2 165,237 + GFF3663 0.67 -0.3 165,237 + GFF3663 0.67 -0.0 165,237 + GFF3663 0.67 -1.0 165,237 + GFF3663 0.67 -0.0 165,237 + GFF3663 0.67 -0.8 165,237 + GFF3663 0.67 -0.5 165,237 + GFF3663 0.67 -0.0 165,237 + GFF3663 0.67 -0.5 165,238 - GFF3663 0.67 -0.9 165,238 - GFF3663 0.67 -1.4 165,238 - GFF3663 0.67 -1.7 165,238 - GFF3663 0.67 -0.4 165,238 - GFF3663 0.67 -0.0 165,238 - GFF3663 0.67 -0.5 165,238 - GFF3663 0.67 -1.6 165,238 - GFF3663 0.67 -0.3 165,238 - GFF3663 0.67 -1.4 165,238 - GFF3663 0.67 +0.4 165,315 + GFF3663 0.76 -1.6 165,315 + GFF3663 0.76 -0.6 165,315 + GFF3663 0.76 -0.4 165,315 + GFF3663 0.76 -0.3 165,315 + GFF3663 0.76 +1.4 165,315 + GFF3663 0.76 +0.4 165,315 + GFF3663 0.76 -1.2 165,315 + GFF3663 0.76 -0.0 165,315 + GFF3663 0.76 +1.0 165,315 + GFF3663 0.76 -0.8 165,315 + GFF3663 0.76 -1.3 165,315 + GFF3663 0.76 +0.4 165,315 + GFF3663 0.76 -1.2 165,315 + GFF3663 0.76 +1.2 165,316 - GFF3663 0.76 +0.2 165,316 - GFF3663 0.76 -1.0 165,316 - GFF3663 0.76 -0.6 165,316 - GFF3663 0.76 +0.2 165,316 - GFF3663 0.76 -0.5 165,316 - GFF3663 0.76 +0.7 165,316 - GFF3663 0.76 +1.0 165,316 - GFF3663 0.76 -0.1 165,316 - GFF3663 0.76 -1.5 165,316 - GFF3663 0.76 +0.4 165,316 - GFF3663 0.76 +2.3 165,316 - GFF3663 0.76 +0.9 165,316 - GFF3663 0.76 -1.2 165,316 - GFF3663 0.76 -0.4 165,316 - GFF3663 0.76 -0.2 165,316 - GFF3663 0.76 +0.1 165,316 - GFF3663 0.76 -0.8 165,976 + GFF3664 0.55 -0.3 165,976 + GFF3664 0.55 +2.0 165,976 + GFF3664 0.55 -0.2 165,976 + GFF3664 0.55 -1.2 165,976 + GFF3664 0.55 +0.5 165,976 + GFF3664 0.55 +0.6 165,976 + GFF3664 0.55 -0.3 165,977 - GFF3664 0.55 -0.4 165,977 - GFF3664 0.55 +0.5 165,977 - GFF3664 0.55 -0.7 165,977 - GFF3664 0.55 -0.6 166,446 + GFF3665 0.18 -1.1 166,446 + GFF3665 0.18 +0.1 166,447 - GFF3665 0.19 -0.7 166,447 - GFF3665 0.19 +0.6 166,447 - GFF3665 0.19 -1.6
Or see this region's nucleotide sequence