Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3648 and GFF3649 are separated by 51 nucleotides GFF3649 and GFF3650 are separated by 155 nucleotides GFF3650 and GFF3651 are separated by 152 nucleotides GFF3651 and GFF3652 overlap by 32 nucleotides GFF3652 and GFF3653 are separated by 10 nucleotides
GFF3648 - putative c'cytochrome, at 153,866 to 154,312
GFF3648
GFF3649 - C-type cytochrome biogenesis protein ResA (thioredoxin), at 154,364 to 154,861
GFF3649
GFF3650 - FIG00932140: hypothetical protein, at 155,017 to 155,502
GFF3650
GFF3651 - PTS system, IIA component, at 155,655 to 156,110
GFF3651
GFF3652 - Phosphotransferase system, phosphocarrier protein HPr, at 156,079 to 156,348
GFF3652
GFF3653 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 156,359 to 158,170
GFF3653
Position (kb) 155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 154.037 kb on + strand, within GFF3648 at 154.038 kb on - strand, within GFF3648 at 154.038 kb on - strand, within GFF3648 at 154.310 kb on + strand at 154.310 kb on + strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.428 kb on + strand, within GFF3649 at 154.428 kb on + strand, within GFF3649 at 154.429 kb on - strand, within GFF3649 at 154.429 kb on - strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.614 kb on + strand, within GFF3649 at 154.614 kb on + strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.851 kb on + strand at 154.851 kb on + strand at 154.851 kb on + strand at 154.852 kb on - strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.870 kb on - strand at 154.870 kb on - strand at 154.870 kb on - strand at 154.892 kb on + strand at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.375 kb on + strand, within GFF3650 at 155.376 kb on - strand, within GFF3650 at 155.376 kb on - strand, within GFF3650 at 155.376 kb on - strand, within GFF3650 at 155.425 kb on + strand, within GFF3650 at 155.426 kb on - strand, within GFF3650 at 155.426 kb on - strand, within GFF3650 at 155.426 kb on - strand, within GFF3650 at 155.509 kb on + strand at 155.510 kb on - strand at 155.510 kb on - strand at 155.510 kb on - strand at 155.524 kb on - strand at 155.534 kb on + strand at 155.600 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.601 kb on + strand at 155.602 kb on - strand at 155.602 kb on - strand at 155.602 kb on - strand at 155.602 kb on - strand at 155.602 kb on - strand at 155.602 kb on - strand at 155.602 kb on - strand at 155.602 kb on - strand at 155.602 kb on - strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.605 kb on + strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.606 kb on - strand at 155.628 kb on + strand at 155.628 kb on + strand at 155.628 kb on + strand at 155.967 kb on + strand, within GFF3651 at 155.967 kb on + strand, within GFF3651 at 155.968 kb on - strand, within GFF3651 at 155.968 kb on - strand, within GFF3651 at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.108 kb on + strand at 156.109 kb on - strand at 156.109 kb on - strand at 156.109 kb on - strand at 156.109 kb on - strand at 156.109 kb on - strand at 156.109 kb on - strand at 156.109 kb on - strand at 156.109 kb on - strand at 156.109 kb on - strand at 156.346 kb on + strand at 156.346 kb on + strand at 156.347 kb on - strand at 156.347 kb on - strand at 156.347 kb on - strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.452 kb on + strand at 156.453 kb on - strand at 156.453 kb on - strand at 156.453 kb on - strand at 156.453 kb on - strand at 156.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 154,037 + GFF3648 0.38 +0.1 154,038 - GFF3648 0.38 +0.6 154,038 - GFF3648 0.38 +0.3 154,310 + +0.5 154,310 + -0.5 154,311 - +1.0 154,311 - -1.1 154,311 - +1.4 154,311 - +0.2 154,311 - -0.4 154,428 + GFF3649 0.13 +0.1 154,428 + GFF3649 0.13 -0.8 154,429 - GFF3649 0.13 -1.6 154,429 - GFF3649 0.13 -0.0 154,464 + GFF3649 0.20 +0.7 154,464 + GFF3649 0.20 -1.9 154,464 + GFF3649 0.20 -0.4 154,464 + GFF3649 0.20 -0.0 154,464 + GFF3649 0.20 +0.3 154,464 + GFF3649 0.20 -1.4 154,464 + GFF3649 0.20 -0.9 154,464 + GFF3649 0.20 +0.6 154,464 + GFF3649 0.20 -0.8 154,464 + GFF3649 0.20 -0.0 154,464 + GFF3649 0.20 -1.1 154,464 + GFF3649 0.20 -1.1 154,464 + GFF3649 0.20 -1.0 154,464 + GFF3649 0.20 -1.0 154,464 + GFF3649 0.20 -0.6 154,464 + GFF3649 0.20 -1.0 154,465 - GFF3649 0.20 +0.1 154,465 - GFF3649 0.20 +0.4 154,465 - GFF3649 0.20 -0.8 154,465 - GFF3649 0.20 -0.5 154,465 - GFF3649 0.20 -1.4 154,465 - GFF3649 0.20 -0.6 154,465 - GFF3649 0.20 -0.2 154,465 - GFF3649 0.20 -0.9 154,465 - GFF3649 0.20 -1.0 154,572 + GFF3649 0.42 +0.4 154,572 + GFF3649 0.42 -2.2 154,572 + GFF3649 0.42 -2.9 154,572 + GFF3649 0.42 -0.5 154,573 - GFF3649 0.42 -1.0 154,573 - GFF3649 0.42 -0.6 154,573 - GFF3649 0.42 -0.4 154,573 - GFF3649 0.42 -1.4 154,573 - GFF3649 0.42 +0.1 154,573 - GFF3649 0.42 -0.4 154,573 - GFF3649 0.42 -0.4 154,573 - GFF3649 0.42 +2.5 154,573 - GFF3649 0.42 +0.1 154,573 - GFF3649 0.42 +1.0 154,573 - GFF3649 0.42 -0.0 154,587 + GFF3649 0.45 +0.6 154,587 + GFF3649 0.45 -0.6 154,587 + GFF3649 0.45 +0.4 154,587 + GFF3649 0.45 +0.5 154,587 + GFF3649 0.45 -0.3 154,587 + GFF3649 0.45 -0.8 154,587 + GFF3649 0.45 -0.9 154,587 + GFF3649 0.45 -0.8 154,587 + GFF3649 0.45 +0.7 154,587 + GFF3649 0.45 -0.3 154,587 + GFF3649 0.45 +0.4 154,588 - GFF3649 0.45 +3.0 154,588 - GFF3649 0.45 -0.9 154,588 - GFF3649 0.45 +1.0 154,588 - GFF3649 0.45 -1.5 154,588 - GFF3649 0.45 +0.7 154,588 - GFF3649 0.45 -0.6 154,588 - GFF3649 0.45 -1.6 154,588 - GFF3649 0.45 +0.6 154,588 - GFF3649 0.45 -0.5 154,614 + GFF3649 0.50 -1.4 154,614 + GFF3649 0.50 -0.9 154,615 - GFF3649 0.50 +0.7 154,615 - GFF3649 0.50 -0.8 154,615 - GFF3649 0.50 -0.4 154,629 + GFF3649 0.53 +0.8 154,629 + GFF3649 0.53 -0.0 154,629 + GFF3649 0.53 -0.3 154,629 + GFF3649 0.53 +0.7 154,629 + GFF3649 0.53 +0.7 154,629 + GFF3649 0.53 -1.6 154,629 + GFF3649 0.53 -0.8 154,630 - GFF3649 0.53 -0.4 154,630 - GFF3649 0.53 -0.9 154,630 - GFF3649 0.53 -1.1 154,630 - GFF3649 0.53 +0.2 154,630 - GFF3649 0.53 -0.5 154,630 - GFF3649 0.53 -0.0 154,630 - GFF3649 0.53 -0.9 154,630 - GFF3649 0.53 -0.7 154,630 - GFF3649 0.53 -1.7 154,630 - GFF3649 0.53 +0.3 154,638 + GFF3649 0.55 -1.6 154,638 + GFF3649 0.55 +1.5 154,638 + GFF3649 0.55 -2.0 154,638 + GFF3649 0.55 +1.0 154,638 + GFF3649 0.55 -1.4 154,639 - GFF3649 0.55 -0.3 154,639 - GFF3649 0.55 -0.1 154,639 - GFF3649 0.55 -0.7 154,639 - GFF3649 0.55 +0.3 154,639 - GFF3649 0.55 -1.0 154,800 + GFF3649 0.88 +0.4 154,800 + GFF3649 0.88 -1.0 154,800 + GFF3649 0.88 -0.6 154,800 + GFF3649 0.88 -1.2 154,800 + GFF3649 0.88 -2.4 154,800 + GFF3649 0.88 -1.2 154,800 + GFF3649 0.88 +0.1 154,800 + GFF3649 0.88 -1.6 154,800 + GFF3649 0.88 +0.6 154,800 + GFF3649 0.88 -0.3 154,801 - GFF3649 0.88 -0.0 154,801 - GFF3649 0.88 -0.8 154,801 - GFF3649 0.88 -1.8 154,801 - GFF3649 0.88 +0.2 154,801 - GFF3649 0.88 +0.1 154,801 - GFF3649 0.88 -0.5 154,801 - GFF3649 0.88 -0.5 154,851 + -0.5 154,851 + -1.0 154,851 + -1.0 154,852 - -0.6 154,869 + +0.7 154,869 + -0.0 154,869 + +0.1 154,869 + -1.0 154,869 + -0.7 154,870 - -0.1 154,870 - -0.4 154,870 - +0.1 154,892 + -1.6 155,375 + GFF3650 0.74 -1.3 155,375 + GFF3650 0.74 -1.0 155,375 + GFF3650 0.74 -0.4 155,375 + GFF3650 0.74 -0.3 155,375 + GFF3650 0.74 -0.0 155,375 + GFF3650 0.74 -0.6 155,375 + GFF3650 0.74 -1.6 155,375 + GFF3650 0.74 +0.5 155,375 + GFF3650 0.74 -0.7 155,375 + GFF3650 0.74 -0.0 155,375 + GFF3650 0.74 -0.4 155,376 - GFF3650 0.74 -0.1 155,376 - GFF3650 0.74 -1.2 155,376 - GFF3650 0.74 +0.5 155,425 + GFF3650 0.84 -1.2 155,426 - GFF3650 0.84 -0.6 155,426 - GFF3650 0.84 -0.9 155,426 - GFF3650 0.84 -0.7 155,509 + -1.4 155,510 - -1.0 155,510 - -0.4 155,510 - +0.3 155,524 - -2.0 155,534 + -1.4 155,600 + +0.1 155,601 + -1.2 155,601 + -0.8 155,601 + +1.1 155,601 + +0.6 155,601 + -0.2 155,601 + -0.7 155,601 + -0.0 155,601 + -0.4 155,601 + -1.0 155,601 + -0.9 155,601 + -1.0 155,601 + -1.0 155,602 - -0.9 155,602 - -0.0 155,602 - -0.2 155,602 - -0.6 155,602 - -0.1 155,602 - -0.2 155,602 - +0.4 155,602 - -0.3 155,602 - -0.9 155,605 + -1.7 155,605 + -0.7 155,605 + -0.4 155,605 + +0.0 155,605 + -0.0 155,605 + -0.6 155,605 + +0.1 155,605 + -0.3 155,605 + +0.7 155,605 + -0.7 155,605 + -0.6 155,605 + -0.4 155,605 + +0.0 155,605 + -0.8 155,605 + -1.5 155,605 + -1.3 155,605 + -1.7 155,605 + -1.2 155,605 + -0.6 155,605 + +0.0 155,605 + -0.1 155,605 + -1.4 155,605 + +0.2 155,605 + -1.6 155,605 + +0.0 155,605 + +0.6 155,605 + +1.1 155,605 + -0.5 155,605 + -0.5 155,605 + -0.4 155,605 + +0.8 155,606 - -0.5 155,606 - -0.6 155,606 - -0.0 155,606 - -0.2 155,606 - +0.7 155,606 - +1.2 155,606 - -0.4 155,606 - -1.0 155,606 - -0.0 155,606 - -0.2 155,606 - +0.2 155,606 - -1.3 155,606 - -0.5 155,606 - -0.7 155,606 - -1.0 155,606 - -1.6 155,606 - +1.5 155,606 - +1.6 155,606 - -0.6 155,628 + -1.0 155,628 + +0.1 155,628 + -0.5 155,967 + GFF3651 0.68 -0.4 155,967 + GFF3651 0.68 +0.4 155,968 - GFF3651 0.69 -0.9 155,968 - GFF3651 0.69 -1.0 156,108 + -0.0 156,108 + -0.7 156,108 + +0.5 156,108 + +0.6 156,108 + +0.6 156,108 + +1.6 156,108 + +0.9 156,108 + +0.3 156,108 + +0.7 156,108 + -0.2 156,108 + -0.2 156,109 - +0.3 156,109 - +0.5 156,109 - +1.7 156,109 - +0.3 156,109 - +1.0 156,109 - +1.0 156,109 - +0.6 156,109 - +1.2 156,109 - +0.8 156,346 + -0.3 156,346 + -1.6 156,347 - -1.4 156,347 - -1.2 156,347 - -0.0 156,452 + +0.3 156,452 + +0.3 156,452 + +0.4 156,452 + +0.8 156,452 + +0.6 156,452 + +0.9 156,452 + +0.9 156,452 + -0.6 156,452 + +0.7 156,452 + +1.6 156,452 + +2.0 156,452 + +0.7 156,452 + +0.1 156,452 + +1.0 156,453 - +1.3 156,453 - -1.4 156,453 - +0.6 156,453 - +0.5 156,453 - +1.0
Or see this region's nucleotide sequence