Strain Fitness in Variovorax sp. SCN45 around GFF3634

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3633 and GFF3634 are separated by 11 nucleotidesGFF3634 and GFF3635 are separated by 224 nucleotidesGFF3635 and GFF3636 overlap by 1 nucleotides GFF3633 - hypothetical protein, at 144,421 to 146,025 GFF3633 GFF3634 - hypothetical protein, at 146,037 to 146,561 GFF3634 GFF3635 - LSU ribosomal protein L3p (L3e), at 146,786 to 147,466 GFF3635 GFF3636 - LSU ribosomal protein L4p (L1e), at 147,466 to 148,086 GFF3636 Position (kb) 146 147Strain fitness (log2 ratio) -2 -1 0 1 2 3at 145.045 kb on + strand, within GFF3633at 145.045 kb on + strand, within GFF3633at 145.045 kb on + strand, within GFF3633at 145.045 kb on + strand, within GFF3633at 145.045 kb on + strand, within GFF3633at 145.046 kb on - strand, within GFF3633at 145.046 kb on - strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.108 kb on + strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.109 kb on - strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.141 kb on + strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.142 kb on - strand, within GFF3633at 145.213 kb on + strand, within GFF3633at 145.213 kb on + strand, within GFF3633at 145.213 kb on + strand, within GFF3633at 145.213 kb on + strand, within GFF3633at 145.213 kb on + strand, within GFF3633at 145.213 kb on + strand, within GFF3633at 145.213 kb on + strand, within GFF3633at 145.213 kb on + strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.214 kb on - strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.216 kb on + strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.217 kb on - strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.348 kb on + strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.349 kb on - strand, within GFF3633at 145.388 kb on + strand, within GFF3633at 145.388 kb on + strand, within GFF3633at 145.388 kb on + strand, within GFF3633at 145.388 kb on + strand, within GFF3633at 145.389 kb on - strand, within GFF3633at 145.432 kb on + strand, within GFF3633at 145.433 kb on - strand, within GFF3633at 145.649 kb on - strand, within GFF3633at 145.649 kb on - strand, within GFF3633at 145.714 kb on + strand, within GFF3633at 145.714 kb on + strand, within GFF3633at 145.714 kb on + strand, within GFF3633at 145.714 kb on + strand, within GFF3633at 145.714 kb on + strand, within GFF3633at 145.714 kb on + strand, within GFF3633at 145.714 kb on + strand, within GFF3633at 145.714 kb on + strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.715 kb on - strand, within GFF3633at 145.797 kb on + strand, within GFF3633at 145.797 kb on + strand, within GFF3633at 145.797 kb on + strand, within GFF3633at 145.798 kb on - strand, within GFF3633at 145.804 kb on + strand, within GFF3633at 145.804 kb on + strand, within GFF3633at 145.804 kb on + strand, within GFF3633at 145.804 kb on + strand, within GFF3633at 145.804 kb on + strand, within GFF3633at 145.804 kb on + strand, within GFF3633at 145.804 kb on + strand, within GFF3633at 145.804 kb on + strand, within GFF3633at 145.805 kb on - strand, within GFF3633at 145.805 kb on - strand, within GFF3633at 145.808 kb on + strand, within GFF3633at 145.837 kb on + strand, within GFF3633at 145.837 kb on + strand, within GFF3633at 145.837 kb on + strand, within GFF3633at 145.837 kb on + strand, within GFF3633at 145.837 kb on + strand, within GFF3633at 145.837 kb on + strand, within GFF3633at 145.838 kb on - strand, within GFF3633at 145.838 kb on - strand, within GFF3633at 145.838 kb on - strand, within GFF3633at 145.914 kb on + strandat 145.914 kb on + strandat 145.914 kb on + strandat 145.942 kb on + strandat 145.942 kb on + strandat 145.942 kb on + strandat 145.942 kb on + strandat 145.942 kb on + strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 145.943 kb on - strandat 146.023 kb on + strandat 146.023 kb on + strandat 146.023 kb on + strandat 146.023 kb on + strandat 146.024 kb on - strandat 146.024 kb on - strandat 146.208 kb on + strand, within GFF3634at 146.208 kb on + strand, within GFF3634at 146.208 kb on + strand, within GFF3634at 146.208 kb on + strand, within GFF3634at 146.208 kb on + strand, within GFF3634at 146.208 kb on + strand, within GFF3634at 146.208 kb on + strand, within GFF3634at 146.208 kb on + strand, within GFF3634at 146.209 kb on - strand, within GFF3634at 146.209 kb on - strand, within GFF3634at 146.209 kb on - strand, within GFF3634at 146.209 kb on - strand, within GFF3634at 146.209 kb on - strand, within GFF3634at 146.209 kb on - strand, within GFF3634at 146.209 kb on - strand, within GFF3634at 146.393 kb on + strand, within GFF3634at 146.393 kb on + strand, within GFF3634at 146.394 kb on - strand, within GFF3634at 146.394 kb on - strand, within GFF3634at 146.412 kb on + strand, within GFF3634at 146.412 kb on + strand, within GFF3634at 146.412 kb on + strand, within GFF3634at 146.412 kb on + strand, within GFF3634at 146.412 kb on + strand, within GFF3634at 146.412 kb on + strand, within GFF3634at 146.412 kb on + strand, within GFF3634at 146.412 kb on + strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.413 kb on - strand, within GFF3634at 146.513 kb on + strandat 146.513 kb on + strandat 146.513 kb on + strandat 146.513 kb on + strandat 146.513 kb on + strandat 146.513 kb on + strandat 146.513 kb on + strandat 146.513 kb on + strandat 146.514 kb on - strandat 146.559 kb on + strandat 146.560 kb on - strandat 146.560 kb on - strandat 146.560 kb on - strandat 146.560 kb on - strandat 146.634 kb on + strandat 146.634 kb on + strandat 146.634 kb on + strandat 146.635 kb on - strandat 146.706 kb on + strandat 146.706 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
145,045 + GFF3633 0.39 +1.2
145,045 + GFF3633 0.39 +0.4
145,045 + GFF3633 0.39 -0.8
145,045 + GFF3633 0.39 +1.1
145,045 + GFF3633 0.39 -0.4
145,046 - GFF3633 0.39 -1.2
145,046 - GFF3633 0.39 -2.1
145,108 + GFF3633 0.43 -0.2
145,108 + GFF3633 0.43 -0.3
145,108 + GFF3633 0.43 +0.9
145,108 + GFF3633 0.43 -1.6
145,108 + GFF3633 0.43 -1.3
145,108 + GFF3633 0.43 -0.2
145,108 + GFF3633 0.43 +0.4
145,108 + GFF3633 0.43 -0.3
145,108 + GFF3633 0.43 +1.2
145,108 + GFF3633 0.43 -0.6
145,109 - GFF3633 0.43 +0.4
145,109 - GFF3633 0.43 -0.6
145,109 - GFF3633 0.43 +1.2
145,109 - GFF3633 0.43 +0.1
145,109 - GFF3633 0.43 +0.1
145,109 - GFF3633 0.43 -0.0
145,109 - GFF3633 0.43 +0.2
145,109 - GFF3633 0.43 -0.3
145,109 - GFF3633 0.43 -0.5
145,141 + GFF3633 0.45 -0.1
145,141 + GFF3633 0.45 +0.2
145,141 + GFF3633 0.45 -0.2
145,141 + GFF3633 0.45 -0.4
145,141 + GFF3633 0.45 +0.1
145,141 + GFF3633 0.45 -0.6
145,141 + GFF3633 0.45 -0.1
145,141 + GFF3633 0.45 -1.4
145,141 + GFF3633 0.45 -0.3
145,141 + GFF3633 0.45 +0.7
145,141 + GFF3633 0.45 -0.3
145,141 + GFF3633 0.45 +1.6
145,142 - GFF3633 0.45 -1.5
145,142 - GFF3633 0.45 -0.5
145,142 - GFF3633 0.45 +0.7
145,142 - GFF3633 0.45 -0.5
145,142 - GFF3633 0.45 -0.8
145,142 - GFF3633 0.45 +1.1
145,142 - GFF3633 0.45 -1.1
145,142 - GFF3633 0.45 -0.0
145,142 - GFF3633 0.45 +0.0
145,142 - GFF3633 0.45 -0.0
145,142 - GFF3633 0.45 +0.8
145,142 - GFF3633 0.45 +1.0
145,142 - GFF3633 0.45 +0.9
145,142 - GFF3633 0.45 -0.4
145,213 + GFF3633 0.49 -0.3
145,213 + GFF3633 0.49 -0.4
145,213 + GFF3633 0.49 +1.4
145,213 + GFF3633 0.49 -2.4
145,213 + GFF3633 0.49 -0.0
145,213 + GFF3633 0.49 -2.0
145,213 + GFF3633 0.49 -0.9
145,213 + GFF3633 0.49 -1.9
145,214 - GFF3633 0.49 -1.3
145,214 - GFF3633 0.49 +0.1
145,214 - GFF3633 0.49 +0.2
145,214 - GFF3633 0.49 -1.5
145,214 - GFF3633 0.49 -0.0
145,214 - GFF3633 0.49 +0.7
145,214 - GFF3633 0.49 -0.0
145,214 - GFF3633 0.49 +0.7
145,214 - GFF3633 0.49 -0.6
145,216 + GFF3633 0.50 -0.6
145,216 + GFF3633 0.50 -0.4
145,216 + GFF3633 0.50 -0.6
145,216 + GFF3633 0.50 -0.7
145,216 + GFF3633 0.50 +0.4
145,216 + GFF3633 0.50 -0.8
145,216 + GFF3633 0.50 -0.7
145,216 + GFF3633 0.50 -0.1
145,216 + GFF3633 0.50 +0.2
145,216 + GFF3633 0.50 -0.3
145,216 + GFF3633 0.50 -0.6
145,217 - GFF3633 0.50 -0.4
145,217 - GFF3633 0.50 +0.0
145,217 - GFF3633 0.50 +0.1
145,217 - GFF3633 0.50 -0.2
145,217 - GFF3633 0.50 -0.7
145,217 - GFF3633 0.50 -1.1
145,217 - GFF3633 0.50 +0.3
145,217 - GFF3633 0.50 -0.3
145,217 - GFF3633 0.50 -0.7
145,217 - GFF3633 0.50 +0.1
145,217 - GFF3633 0.50 -0.1
145,217 - GFF3633 0.50 +0.3
145,348 + GFF3633 0.58 -1.3
145,348 + GFF3633 0.58 -0.6
145,348 + GFF3633 0.58 -0.5
145,348 + GFF3633 0.58 -1.5
145,348 + GFF3633 0.58 -0.3
145,348 + GFF3633 0.58 +0.4
145,348 + GFF3633 0.58 +0.8
145,348 + GFF3633 0.58 -0.5
145,348 + GFF3633 0.58 -0.4
145,348 + GFF3633 0.58 -0.3
145,348 + GFF3633 0.58 +0.3
145,348 + GFF3633 0.58 -1.0
145,348 + GFF3633 0.58 -0.5
145,348 + GFF3633 0.58 +0.4
145,349 - GFF3633 0.58 +0.1
145,349 - GFF3633 0.58 -0.1
145,349 - GFF3633 0.58 +0.1
145,349 - GFF3633 0.58 +1.5
145,349 - GFF3633 0.58 +1.1
145,349 - GFF3633 0.58 +0.1
145,349 - GFF3633 0.58 -0.3
145,349 - GFF3633 0.58 +0.1
145,349 - GFF3633 0.58 +0.3
145,349 - GFF3633 0.58 -0.5
145,349 - GFF3633 0.58 +0.2
145,349 - GFF3633 0.58 +1.0
145,349 - GFF3633 0.58 -0.1
145,388 + GFF3633 0.60 -1.0
145,388 + GFF3633 0.60 +0.3
145,388 + GFF3633 0.60 -1.1
145,388 + GFF3633 0.60 -0.2
145,389 - GFF3633 0.60 -0.6
145,432 + GFF3633 0.63 -0.3
145,433 - GFF3633 0.63 -0.1
145,649 - GFF3633 0.77 -0.3
145,649 - GFF3633 0.77 +0.6
145,714 + GFF3633 0.81 +0.4
145,714 + GFF3633 0.81 -0.6
145,714 + GFF3633 0.81 +1.3
145,714 + GFF3633 0.81 -0.4
145,714 + GFF3633 0.81 -1.4
145,714 + GFF3633 0.81 +0.2
145,714 + GFF3633 0.81 +0.0
145,714 + GFF3633 0.81 -0.3
145,715 - GFF3633 0.81 -2.1
145,715 - GFF3633 0.81 -0.7
145,715 - GFF3633 0.81 -0.6
145,715 - GFF3633 0.81 -0.6
145,715 - GFF3633 0.81 +0.4
145,715 - GFF3633 0.81 +0.4
145,715 - GFF3633 0.81 -0.1
145,715 - GFF3633 0.81 -1.0
145,715 - GFF3633 0.81 -0.2
145,797 + GFF3633 0.86 -0.9
145,797 + GFF3633 0.86 -0.3
145,797 + GFF3633 0.86 +0.8
145,798 - GFF3633 0.86 -0.2
145,804 + GFF3633 0.86 -0.8
145,804 + GFF3633 0.86 -0.2
145,804 + GFF3633 0.86 +0.5
145,804 + GFF3633 0.86 -1.9
145,804 + GFF3633 0.86 +0.1
145,804 + GFF3633 0.86 +0.1
145,804 + GFF3633 0.86 -1.4
145,804 + GFF3633 0.86 -0.3
145,805 - GFF3633 0.86 -0.2
145,805 - GFF3633 0.86 -0.7
145,808 + GFF3633 0.86 +0.1
145,837 + GFF3633 0.88 +0.6
145,837 + GFF3633 0.88 +1.6
145,837 + GFF3633 0.88 -0.5
145,837 + GFF3633 0.88 -0.5
145,837 + GFF3633 0.88 -0.5
145,837 + GFF3633 0.88 -0.3
145,838 - GFF3633 0.88 +0.5
145,838 - GFF3633 0.88 +0.1
145,838 - GFF3633 0.88 -1.2
145,914 + -1.0
145,914 + +0.0
145,914 + -0.4
145,942 + +0.0
145,942 + +0.2
145,942 + +0.3
145,942 + -1.5
145,942 + +0.1
145,943 - +3.3
145,943 - -1.1
145,943 - -0.6
145,943 - -0.6
145,943 - +0.0
145,943 - +1.4
145,943 - +0.5
145,943 - -0.5
145,943 - +0.3
145,943 - +0.2
145,943 - -0.4
145,943 - -0.5
145,943 - +0.4
145,943 - +0.6
145,943 - -1.9
145,943 - -0.9
145,943 - -0.7
146,023 + +0.5
146,023 + -0.9
146,023 + -0.6
146,023 + +0.4
146,024 - -0.9
146,024 - -0.2
146,208 + GFF3634 0.33 +0.5
146,208 + GFF3634 0.33 -0.4
146,208 + GFF3634 0.33 -0.9
146,208 + GFF3634 0.33 -0.3
146,208 + GFF3634 0.33 -0.5
146,208 + GFF3634 0.33 -0.5
146,208 + GFF3634 0.33 -1.2
146,208 + GFF3634 0.33 +1.4
146,209 - GFF3634 0.33 -0.3
146,209 - GFF3634 0.33 -0.1
146,209 - GFF3634 0.33 +0.1
146,209 - GFF3634 0.33 -0.7
146,209 - GFF3634 0.33 -0.7
146,209 - GFF3634 0.33 -0.1
146,209 - GFF3634 0.33 +0.5
146,393 + GFF3634 0.68 -0.0
146,393 + GFF3634 0.68 -0.2
146,394 - GFF3634 0.68 +0.2
146,394 - GFF3634 0.68 -0.8
146,412 + GFF3634 0.71 +2.0
146,412 + GFF3634 0.71 -0.7
146,412 + GFF3634 0.71 +0.3
146,412 + GFF3634 0.71 +0.1
146,412 + GFF3634 0.71 -0.6
146,412 + GFF3634 0.71 -0.9
146,412 + GFF3634 0.71 -0.3
146,412 + GFF3634 0.71 +0.3
146,413 - GFF3634 0.72 -0.3
146,413 - GFF3634 0.72 -0.4
146,413 - GFF3634 0.72 -0.5
146,413 - GFF3634 0.72 +0.4
146,413 - GFF3634 0.72 -1.2
146,413 - GFF3634 0.72 -0.6
146,413 - GFF3634 0.72 -0.0
146,413 - GFF3634 0.72 -1.1
146,413 - GFF3634 0.72 -0.2
146,413 - GFF3634 0.72 -0.4
146,513 + -0.8
146,513 + +0.4
146,513 + -0.0
146,513 + +0.4
146,513 + +0.1
146,513 + +0.4
146,513 + +0.7
146,513 + -0.4
146,514 - +0.7
146,559 + -0.4
146,560 - +1.4
146,560 - -0.6
146,560 - +0.6
146,560 - +0.1
146,634 + +0.1
146,634 + +1.0
146,634 + +0.7
146,635 - -0.9
146,706 + -0.6
146,706 + +0.6

Or see this region's nucleotide sequence